[R] AffyChip Background Analysis

Seth Falcon sfalcon at fhcrc.org
Tue Aug 29 15:45:44 CEST 2006


Gunther Höning <gunther.hoening at ukmainz.de> writes:

> Dear list,
>
> I want to analyse some HG133Plus2.0 Affymetrix chips.
> The first thing I intent to do, is just to perform a "background correction
> (mas, rma, gcrma,...)" with the cel files.
> Then I want to take a look at the files.
> How can I do this ? 

You might want to take a look at some of the packages in the
Bioconductor project.

Here is a link to the BioC packages that deal with visualization:
http://www.bioconductor.org/packages/release/Visualization.html

+ seth



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