[R] Clustering and bootstrap

[David Duffy]

> From: Eric Pante <ericpante at hotmail.com>
>
> Dear Listers,
>
> I emailed the list a few days ago about how to bootstrap a community
> matrix (species by sites) and get a consensus tree with node support. A
> friend pointed out that a similar question remained unanswered in 2004.
> I wish to re-word my question: is anyone aware of a package / method to
> obtain a majority-rule consensus tree from x distance matrices ? Is
> anyone using R to generate phylogenetic trees with node support ?
>

This is not (currently ;)) an R solution nor bootstrapping, instead
using a pretty general reversible-jump type Gibbs sampler (see P 11 onward
and refs)

http://eprint.uq.edu.au/archive/00001138/