[R] R2WinBUGS: Data loading error
Hadassa Brunschwig
h.brunschwig at utoronto.ca
Thu Sep 22 14:52:05 CEST 2005
Hi R-Help!
I am trying to use R2WinBUGS but I get the following error message in WinBUGS
(and there must be something wrong with my R statement as I tried it directly in
WinBUGS and it worked):
display(log)
check(C:/Documents and Settings/Daikon/Roche/pop_model.txt)
model is syntactically correct
data(C:/Documents and Settings/Daikon/Roche/data.txt)
expected key word structure
compile(7)
...(and of course nothing works after that)
and when I close WinBUGS i get:
Error in file(file, "r") : unable to open connection
In addition: Warning message:
cannot open file 'codaIndex.txt'
Does anyone know what this 'expected key word structure' means?
This is my R code (and I guess my model file is ok):
modelA <- c("C:/Documents and Settings/Daikon/Roche/pop_model.txt")
n <- length(unique(subsetA$subject)) #number of subjects
nt <- 13 #number of days
Y <- subsetA$concentr #concentration per day/subject
t <- 1:13 #days
dataA <- list("n","nt","Y","t")
parameters <- c("tau","C0","st90","C0.pop","st90.pop","tau.cpop","tau.stpop")
inits <-
list(tau=c(1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1),C0=5,st90=4,C0.pop=5,st90.pop=4,tau.cpop=0.2,tau.stpop=1)
mcmcA <-
bugs(dataA,inits,parameters,modelA,debug=T,n.chains=7,bugs.directory="c:/Program
Files/WinBUGS14",working.directory="C:/Documents and Settings/Daikon/Roche")
Thanks so much...
Hadassa
--
Hadassa Brunschwig
Birmannsgasse 10A
CH-4055 Basel
Switzerland
Phone: +41 78 797 6065
Email: h.brunschwig at utoronto.ca
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