[R] Re: S4 method inheritance

Robert Gentleman rgentlem at fhcrc.org
Tue May 24 15:27:56 CEST 2005

Duncan Murdoch wrote:
> Ross Boylan wrote:
>> On Mon, 2005-05-23 at 14:41 -0700, Ross Boylan wrote:
>> ....
>>> Finally, I'm a bit concerned that one article mentioned that S4
>>> inheritance, in practice, is used mostly for data, not methods (Thomas
>>> Lumley, R News 4(1), June 2004: p. 36).  Am I going down a road I
>>> shouldn't travel?
>> Hmm, maybe I just found out.  If B is an S4 subclass of A (aka extends
>> A), how does B's method foo invoke A's foo?
> Your question doesn't make sense in S4.  In S4, classes don't have 
> methods, generics have methods.  There's no such thing as "B's method" 
> or "A's method".
> You might get what you want with foo(as(bObject, "A")) if bObject is an 
> instance of class B.
>> The question assumes that A's foo was defined as an in place function,
>> so there's no (obvious) named object for it, i.e,
>> setMethod("A", signature(blah="numeric"), function(x) something)

In general it may be best to think of a generic function as a 
dispatching mechanism. For S4 methods are associated with a specific 
generic function. A generic knows about all methods that are associated 
with it, and about no others. Thus in S4, the little tiff over who owns 
label goes away - they both do - different packages can define generic 
functions for label, or anything else they care to, and users can write 
methods for specific generic functions and associate them with a 
generic. [Note that in the S3 system there is no real mechanism for 
saying that foo.bar is a method for one generic named foo, and not for 
another - but the language does allow for multiple generics named foo - 
one of the very many reasons that S3 does not really do what you want it 
to, but many seem convinced otherwise].

The class hierarchy of the actual supplied arguments, is used to 
determine the dispatch order (a linearization of the available methods) 
once the generic is invoked. The most specific method is used first. It 
may intiate a call to callNextMethod (S4) or NextMethod (S3) to transfer 
control to the next most specific method - the manual pages provide more 
specific details.

As Duncan said - classes do not own methods in this paradigm. Generic 
functions do.


> I don't know what you mean by "in place function", but I hope my answer 
> helps anyway.
> Duncan Murdoch
> ______________________________________________
> R-help at stat.math.ethz.ch mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide! 
> http://www.R-project.org/posting-guide.html

More information about the R-help mailing list