[R] Feedback requested on a solution to specifying R-scripts on the command line
Mike R
mike.rstat at gmail.com
Thu Jun 9 01:17:55 CEST 2005
Hi All,
I'm new to R and would like to get started on the right
foot, so to say. So I am requesting feedback on a
paradigm for organizing R projects. In esence, I am
trying to organize my R projects in the same way I
organize my numerical simulations. But it feels like
I am imposing
In particular, I'm not sure why the ability to specify
R-scripts on the command line is not "built in" to R.
For example, am I not understanding the traditional
paradigm for R projects? If so, is there documentation
that gives a practical orientation to R projects?
>From the command line, I'd like to be able to start an
interactive R session and at the same time, be able
to specify on the command line a project-specific or
task-specific script (R code) that is to be executed
at the beginning of the session.
My current solution is the following:
Add the following line to dot-Rprofile:
.First <- function()
{
if( Sys.getenv("R_CUSTOM") != "" )
{
for ( filename in strsplit(Sys.getenv("R_CUSTOM")," ")[[1]] )
{
source( filename )
}
}
}
Then set the environement variable R_CUSTOM using a wrapper.
Here is a wrapper for bash:
#! /bin/bash
export R_CUSTOM=$*
R
If the wrapper file is named wrapR then here are some sample
command lines (my shell prompt is set to ##):
## wrapR
## wrapR project_kit.R
## wrapR project_kit.R 00task_verify_mikes_datafile.R
## wrapR project_kit.R 02task_verify_jeffs_datafile.R
## wrapR project_kit.R 11task_analyze_pooled_data.R
## wrapR project_kit.R 21task_generate_figures_for_executivesummary.R
## wrapR project_kit.R 22task_generate_figures_for_paper.R
Normally these could be run using redirection,
as in the following command line:
## R < 22kit_n_task_generate_figures_for_paper.R
but in that case, R exits when through.
Any comments would be welcome.
Thanks in advance,
Mike
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