[R] Specifying medoids in PAM?
David Finlayson
david.p.finlayson at gmail.com
Tue Jun 7 21:11:25 CEST 2005
I am using the PAM algorithm in the CLUSTER library.
When I allow PAM to seed the medoids using the default __build__
algorithm things work
well:
> pam(stats.table, metric="euclidean", stand=TRUE, k=5)
But I have some clusters from a Hierarchical analysis that I would
like to use as seeds for the PAM algorithm. I can't figure what the
mediod argument wants. When I put in the five integer indicies for the
observations in stats.table that I would like to use as seeds (the row
numbers), I segfault R.
> pam(stats.table, metric="euclidean", stand=TRUE, medoids=c(1,3,20,2,5), k=5)
*** R Crashes ***
Here is my version info:
> version
_
platform i386-pc-mingw32
arch i386
os mingw32
system i386, mingw32
status
major 2
minor 0.1
year 2004
month 11
day 15
language R
Any guidance would be appreciated.
David
--
David Finlayson
Marine Geology & Geophysics
School of Oceanography
Box 357940
University of Washington
Seattle, WA 98195-7940
USA
Office: Marine Sciences Building, Room 112
Phone: (206) 616-9407
Web: http://students.washington.edu/dfinlays
More information about the R-help
mailing list