[R] PCA problem in R
Berton Gunter
gunter.berton at gene.com
Mon Aug 15 19:11:50 CEST 2005
You are wrong. No covariance matrix is computed. Please don't "speculate" --
read the Help file which clearly states:
"The calculation is done by a singular value decomposition of the (centered
and possibly scaled) data matrix, not by using eigen on the covariance
matrix. This is generally the preferred method for numerical accuracy. "
-- Bert Gunter
> I speculate that the underlying function transposes the
> input data matrix and computes the the TxT [rather than SxS]
> covariance matrix and solves for the eigenvalues/vectors.
> It then uses a linear transformation to get the results
> for the original input data matrix.
>
> Computationally, the above is much faster and uses less memory.
>
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