[R] Estimating parameters for a bimodal distribution
George W. Gilchrist
gwgilc at wm.edu
Thu Sep 16 16:59:35 CEST 2004
For several years, I have been using Splus to analyze an ongoing series of
datasets that have a bimodal distribution. I have used the following
functions, in particular the ms() function, to estimate the parameters: two
means, two standard deviations, and one proportion. Here is the code I've
been using in S:
btmp.bi <- function(vec, p, m1, m2, sd1, sd2)
{
(exp(p)/(1+exp(p)))*dnorm(vec,mean=m1,sd=abs(sd1))+
(1-(exp(p)/(1+exp(p))))*dnorm(vec,mean=m2,sd=abs(sd2))
}
btmp11 <- ms( ~ - sum(log((btmp.bi(btmp1$Temp, p, m1, m2,
s1, s2)))), start = list(p = 0.4, m1 = 38, m2 = 40, s1
= 1, s2 = 1), control = list(maxiter = 200))
I have looked in the archives and tried various alternatives, especially
optim(), but so far have had nothing but frustration. I've been running this
in a semi-automated program on several hundred datasets a few times each
month for several years now. I would like to figure out how to move this to
R. Thank you for any help you might offer.
==================================================================
George W. Gilchrist Email #1: gwgilc at wm.edu
Department of Biology, Box 8795 Email #2: kitesci at cox.net
College of William & Mary Phone: (757) 221-7751
Williamsburg, VA 23187-8795 Fax: (757) 221-6483
http://gwgilc.people.wm.edu/
More information about the R-help
mailing list