[R] pattern search

[Sean Liang]

Uwe:

Thanks for getting back to me. My situation is a bit more complicated.
I have a vector of sequences each of which might contain any number of a
given pattern (e.g.

>pat=c("ATCGTTTGCTAC", "GGCTAATGCATTGC");
> grep ("TGC", pat)
[1] 1 2

grep only tells me the position of first occurrence in each element
whereas the second element contains two "TGC"s. 



>>> Uwe Ligges <ligges at statistik.uni-dortmund.de> 10/29/2004 2:27:27 PM
>>>
Sean Liang wrote:

> hi, I like to find a pattern within a giver sequence. There might be
> multiple occurences of the pattern. I like to know the number of
> occurences and the positions if possible. "grep" can tell me if a
> pattern exists but can't give me the information I need. Does anyone
> know any function that I can use or know how to do what I intend?.

???

   gr <- grep("a", c("a", "b", "a"))

grep tells you that the positions are 1 and 3. length(gr) tells you 
there are two occurences.

Uwe Ligges


> Thanks a lot.
> 
> Sean
> 
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