[R] scan or source a text file into a list
Liaw, Andy
andy_liaw at merck.com
Thu Nov 11 17:45:36 CET 2004
Here's one way:
> myList <- mget(ls(), .GlobalEnv)
> myList
$fnr
[1] 0.3
$nYears
[1] 50
$qe
[1] 0.04
$year0
[1] 1970
HTH,
Andy
> From: Andy Bunn
>
> I've ported somebody else's rather cumbersome Matlab model to R for
> colleagues that want a free build of the model with the same
> type of I/O.
>
> The Matlab model reads a text file with the initial
> parameters specified as:
>
> C:\Data\Carluc\Rport>more Params.R
> # Number of years to simulate
> nYears = 50;
> # Initial year for graphing purposes
> year0 = 1970;
> # NPP/GPP ratio (cpp0 unitless)
> fnr = 0.30;
> # Quantum efficency
> qe = 0.040;
>
> That is, there are four input variables (for this run - there
> can be many
> more) written in a way that R can understand them. In R, I
> can have the
> model source the parameter text file easily enough and have
> the objects in
> the workspace. The model function in R takes a list at
> runtime. How can I
> have R read that file and put the contents into the list I need?
>
> E.g.,
> > rm(list = ls())
> > source("Params.R")
> > ls()
> [1] "fnr" "nYears" "qe" "year0"
> > fnr
> [1] 0.3
> > nYears
> [1] 50
> > foo.list <- list(fnr = fnr, nYears = nYears)
> >
> > foo.list
> $fnr
> [1] 0.3
>
> $nYears
> [1] 50
>
>
> The model is then run with
> > CarlucR(inputParamList = foo.list, ...)
>
> I can't build inputParamList "by hand" as above because the number of
> initial parameters changes with the model run and this runs
> in a wrapper.
>
> Any thoughts? Some combination of paste with scan or parse?
> -Andy
>
>
> > version
> _
> platform i386-pc-mingw32
> arch i386
> os mingw32
> system i386, mingw32
> status
> major 2
> minor 0.0
> year 2004
> month 10
> day 04
> language R
> >
>
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