SV: [R] Documentation on how to put classes and methods in packageswith namespace?

Jens Henrik Badsberg JensHenrik.Badsberg at agrsci.dk
Tue Mar 16 14:32:42 CET 2004


 Please disregard the previous mail.

 "a bug report" made me test in version 1.9.0 (alpha).

 Here it works fine, e.i. without changing the version of
 "dynamicGraph" on CRAN.

 Regards,

 Jens Henrik


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[Previously saved workspace restored]

> search()
[1] ".GlobalEnv"       "package:stats"    "package:graphics" "package:utils"   
[5] "package:methods"  "Autoloads"        "package:base"    
> library(dynamicGraph)
Loading required package: tcltk 
> search()
[1] ".GlobalEnv"           "package:tcltk"        "package:dynamicGraph"
[4] "package:stats"        "package:graphics"     "package:utils"       
[7] "package:methods"      "Autoloads"            "package:base"        
> ls(pos=3, all.names=TRUE)
  [1] ".__C__BlockEdgeProto"                   ".__C__BlockProto"                      
  [3] ".__C__CanvasProto"                      ".__C__ContinuousVertexProto"           
  [5] ".__C__defaultModelObjectProto"          ".__C__defaultTestObjectProto"          
  [7] ".__C__DiscreteGeneratorProto"           ".__C__DiscreteVertexProto"             
  [9] ".__C__EdgeProto"                        ".__C__FactorEdgeProto"                 
 [11] ".__C__FactorVertexProto"                ".__C__GeneratorProto"                  
 [13] ".__C__GraphLatticeProto"                ".__C__LinearGeneratorProto"            
 [15] ".__C__NodeProto"                        ".__C__OrdinalVertexProto"              
 [17] ".__C__QuadraticGeneratorProto"          ".__C__VertexEdgeProto"                 
 [19] ".__C__VertexProto"                      ".__M__addToPopups:dynamicGraph"        
 [21] ".__M__ancestors:dynamicGraph"           ".__M__ancestors<-:dynamicGraph"        
 [23] ".__M__color:dynamicGraph"               ".__M__color<-:dynamicGraph"            
 [25] ".__M__Colors:dynamicGraph"              ".__M__Colors<-:dynamicGraph"           
 [27] ".__M__descendants:dynamicGraph"         ".__M__descendants<-:dynamicGraph"      
 [29] ".__M__draw:dynamicGraph"                ".__M__edgeLabel:dynamicGraph"          
 [31] ".__M__edgeLabel<-:dynamicGraph"         ".__M__edgeWidth:dynamicGraph"          
 [33] ".__M__edgeWidth<-:dynamicGraph"         ".__M__index:dynamicGraph"              
 [35] ".__M__index<-:dynamicGraph"             ".__M__Indices:dynamicGraph"            
 [37] ".__M__label:dynamicGraph"               ".__M__label<-:dynamicGraph"            
 [39] ".__M__labelOfEdge:dynamicGraph"         ".__M__labelOfEdge<-:dynamicGraph"      
 [41] ".__M__labelPosition:dynamicGraph"       ".__M__labelPosition<-:dynamicGraph"    
 [43] ".__M__LabelPositions:dynamicGraph"      ".__M__LabelPositions<-:dynamicGraph"   
 [45] ".__M__Labels:dynamicGraph"              ".__M__Labels<-:dynamicGraph"           
 [47] ".__M__name:dynamicGraph"                ".__M__name<-:dynamicGraph"             
 [49] ".__M__Names:dynamicGraph"               ".__M__Names<-:dynamicGraph"            
 [51] ".__M__NodeAncestors:dynamicGraph"       ".__M__NodeAncestors<-:dynamicGraph"    
 [53] ".__M__NodeDescendants:dynamicGraph"     ".__M__NodeDescendants<-:dynamicGraph"  
 [55] ".__M__nodeIndices:dynamicGraph"         ".__M__NodeIndices:dynamicGraph"        
 [57] ".__M__nodeIndices<-:dynamicGraph"       ".__M__nodeIndicesOfEdge:dynamicGraph"  
 [59] ".__M__nodeIndicesOfEdge<-:dynamicGraph" ".__M__NodeTypes:dynamicGraph"          
 [61] ".__M__nodeTypesOfEdge:dynamicGraph"     ".__M__oriented:dynamicGraph"           
 [63] ".__M__Oriented:dynamicGraph"            ".__M__oriented<-:dynamicGraph"         
 [65] ".__M__Oriented<-:dynamicGraph"          ".__M__position:dynamicGraph"           
 [67] ".__M__position<-:dynamicGraph"          ".__M__Positions:dynamicGraph"          
 [69] ".__M__Positions<-:dynamicGraph"         ".__M__Strata:dynamicGraph"             
 [71] ".__M__Strata<-:dynamicGraph"            ".__M__stratum:dynamicGraph"            
 [73] ".__M__stratum<-:dynamicGraph"           ".__M__visible:dynamicGraph"            
 [75] ".__M__Visible:dynamicGraph"             ".__M__visible<-:dynamicGraph"          
 [77] ".__M__Visible<-:dynamicGraph"           ".__M__width:dynamicGraph"              
 [79] ".__M__width<-:dynamicGraph"             ".__M__widthOfEdge:dynamicGraph"        
 [81] ".__M__widthOfEdge<-:dynamicGraph"       ".__M__Widths:dynamicGraph"             
 [83] ".__M__Widths<-:dynamicGraph"            ".onLoad.dynamicGraph"                  
 [85] ".onLoad.dynamicGraphInterface"          "addToPopups"                           
 [87] "ancestors"                              "ancestors<-"                           
 [89] "blockTreeToList"                        "color"                                 
 [91] "color<-"                                "Colors"                                
 [93] "Colors<-"                               "descendants"                           
 [95] "descendants<-"                          "draw"                                  
 [97] "DynamicGraph"                           "dynamicGraphMain"                      
 [99] "edgeLabel"                              "edgeLabel<-"                           
[101] "edgeWidth"                              "edgeWidth<-"                           
[103] "index"                                  "index<-"                               
[105] "Indices"                                "label"                                 
[107] "label<-"                                "labelOfEdge"                           
[109] "labelOfEdge<-"                          "labelPosition"                         
[111] "labelPosition<-"                        "LabelPositions"                        
[113] "LabelPositions<-"                       "Labels"                                
[115] "Labels<-"                               "modalDialog"                           
[117] "name"                                   "name<-"                                
[119] "Names"                                  "Names<-"                               
[121] "nameToVertexIndex"                      "newBlock"                              
[123] "newBlockEdge"                           "newDefaultModelObject"                 
[125] "newDefaultTestObject"                   "newFactor"                             
[127] "newFactorEdge"                          "newVertex"                             
[129] "newVertexEdge"                          "NodeAncestors"                         
[131] "NodeAncestors<-"                        "NodeDescendants"                       
[133] "NodeDescendants<-"                      "nodeIndices"                           
[135] "NodeIndices"                            "nodeIndices<-"                         
[137] "nodeIndicesOfEdge"                      "nodeIndicesOfEdge<-"                   
[139] "NodeTypes"                              "nodeTypesOfEdge"                       
[141] "oriented"                               "Oriented"                              
[143] "oriented<-"                             "Oriented<-"                            
[145] "position"                               "position<-"                            
[147] "Positions"                              "Positions<-"                           
[149] "returnBlockEdgeList"                    "returnEdgeList"                        
[151] "returnFactorEdgeList"                   "returnFactorVerticesAndEdges"          
[153] "returnVertexList"                       "setBlocks"                             
[155] "setTreeBlocks"                          "Strata"                                
[157] "Strata<-"                               "stratum"                               
[159] "stratum<-"                              "validFactorClasses"                    
[161] "validVertexClasses"                     "visible"                               
[163] "Visible"                                "visible<-"                             
[165] "Visible<-"                              "width"                                 
[167] "width<-"                                "widthOfEdge"                           
[169] "widthOfEdge<-"                          "Widths"                                
[171] "Widths<-"                              
> ls()
[1] "a"
> b <- DynamicGraph(1:5)
> 

-----Oprindelig meddelelse-----
Fra: Prof Brian Ripley [mailto:ripley at stats.ox.ac.uk]
Sendt: 16. marts 2004 12:37
Til: Jens Henrik Badsberg
Cc: r-help at stat.math.ethz.ch
Emne: Re: [R] Documentation on how to put classes and methods in
packageswith namespace?


See `Writing R Extensions' in 1.9.0 alpha and the stats4 package there as 
an example.  At this point you probably only want to check a package 
against 1.9.0 alpha, anyway.

On Tue, 16 Mar 2004, Jens Henrik Badsberg wrote:

> 
>  Documentation on how to put classes and methods in packages with namespace?
> 
>  How should I define my classes and methods in "dynamicGraph"???
> 
>  (That is - Can some one point me to the documentation on
>  how to put classes and methods in packages with a namespace? )

[...]

-- 
Brian D. Ripley,                  ripley at stats.ox.ac.uk
Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
University of Oxford,             Tel:  +44 1865 272861 (self)
1 South Parks Road,                     +44 1865 272866 (PA)
Oxford OX1 3TG, UK                Fax:  +44 1865 272595




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