[R] clustalw

A.J. Rossini rossini at blindglobe.net
Tue Jun 8 19:13:06 CEST 2004

It's on Jim Lindsey's WWW site.  It's a nice package.  We've got an
extension that is somewhat incomplete that incorporates BLAST results
(from NCBI, though could config for local use) in a package called
BioSeq1 on Bioconductor's dev site -- I don't think that the CVS
viewer is available, but I could provide a tarball for builds (might
need a bit of hacking in its current state) if there is interest.

Email me privately if so.


"Wolski" <wolski at molgen.mpg.de> writes:

> Hi Daniela!
>>From where you got this package?
> I even havent found it at cran.
> It is not a bioconductor package either.
> and
> search.help("clustalW")
> In any case it is better to contact the package provider directly.
> Sincerely Eryk
> *********** REPLY SEPARATOR  ***********
> On 6/8/2004 at 6:38 PM daniela.marconi at libero.it wrote:
>>>>I'm using the function clustalw in packages dna, but every time i have a
>>>>segmentation fault!
>>>>In your opinion What is the problem?Memory?
>>>>Please help me!!!!
>>>>R-help at stat.math.ethz.ch mailing list
>>>>PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
> Dipl. bio-chem. Eryk Witold Wolski    @    MPI-Moleculare Genetic   
> Ihnestrasse 63-73 14195 Berlin       'v'    
> tel: 0049-30-83875219               /   \    
> mail: wolski at molgen.mpg.de        ---W-W----    http://www.molgen.mpg.de/~wolski
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rossini at u.washington.edu            http://www.analytics.washington.edu/ 
Biomedical and Health Informatics   University of Washington
Biostatistics, SCHARP/HVTN          Fred Hutchinson Cancer Research Center
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