[R] memory limitation with Fortran interface
Guillot Gilles
Gilles.Guillot at inapg.inra.fr
Mon Jan 19 12:19:06 CET 2004
Hi,
I'm using R 7.0 under Linux as a programming interface to Fortran (g77
v0.5.24).
Basically, what I want to do is to call a fortran subroutine of mine
which performs MCMC computations.
Apparently I'm getting into memory management problems.
To track the problem I wrote the following small Fortran subroutine
(saved as test.f) :
subroutine test(n,p)
implicit none
integer n,p,i,j
real x(n,p)
do i=1,n
do j=1,p
x(i,j) = 0
enddo
enddo
end
I compiled it by :
g77 -c test.f
then I called it from R with :
n <- 10000
p <- 1000
system("R CMD SHLIB ~/test.o")
dyn.load("~/test.so")
out.res<- .Fortran("test",
as.integer(n),
as.integer(p)
)
causing R breakdown with the following message :
Segmentation fault
I don't understand why this subroutine causes segmentartion fault
as its execution requires much less memory than what is existing on my
machine (RAM 512 Mo RAM + swap 512 Mo ).
More generally, it seems that memory limitations are stronger
when calling fortran code from R than when executing
the same Fortran subroutine from a bash command line.
Gilles
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