[R] Installing odesolve under MacOSX

[Don MacQueen]

I realize this may not be the most helpful, because I have R 1.8.1 
installed from source code, not RAqua. Nonetheless, odesolve appears 
to install successfully, albeit with some warning messages about 
multiple symbol definitions. OS X 10.2.8.    Were there *no* other 
error messages?

-Don

>  version
          _                       
platform powerpc-apple-darwin6.8.5
arch     powerpc                 
os       darwin6.8.5             
system   powerpc, darwin6.8.5    
status   Patched                 
major    1                       
minor    8.1                     
year     2004                    
month    01                      
day      12                      
language R                       


>  install.packages('odesolve')
trying URL `http://cran.r-project.org/src/contrib/PACKAGES'
Content type `text/plain; charset=iso-8859-1' length 156465 bytes
opened URL
.......... .......... .......... .......... ..........
.......... .......... .......... .......... ..........
.......... .......... .......... .......... ..........
..
downloaded 152Kb

trying URL `http://cran.r-project.org/src/contrib/odesolve_0.5-8.tar.gz'
Content type `application/x-tar' length 71163 bytes
opened URL
.......... .......... .......... .......... ..........
.......... .........
downloaded 69Kb

* Installing *source* package 'odesolve' ...
** libs
g77   -fno-common  -g -O2 -c bnorm.f -o bnorm.o
gcc -no-cpp-precomp -I/Users/macq/darwin.apps/R/R-1.8.1/build/include 
-I/sw/include   -fno-common  -I/sw/include -c call_lsoda.c -o 
call_lsoda.o
g77   -fno-common  -g -O2 -c cfode.f -o cfode.o
g77   -fno-common  -g -O2 -c dgbfa.f -o dgbfa.o
g77   -fno-common  -g -O2 -c dgbsl.f -o dgbsl.o
g77   -fno-common  -g -O2 -c dgefa.f -o dgefa.o
g77   -fno-common  -g -O2 -c dgesl.f -o dgesl.o
g77   -fno-common  -g -O2 -c ewset.f -o ewset.o
g77   -fno-common  -g -O2 -c fdump.f -o fdump.o
g77   -fno-common  -g -O2 -c fnorm.f -o fnorm.o
g77   -fno-common  -g -O2 -c i1mach.f -o i1mach.o
g77   -fno-common  -g -O2 -c intdy.f -o intdy.o
g77   -fno-common  -g -O2 -c j4save.f -o j4save.o
g77   -fno-common  -g -O2 -c lsoda.f -o lsoda.o
gcc -no-cpp-precomp -I/Users/macq/darwin.apps/R/R-1.8.1/build/include 
-I/sw/include   -fno-common  -I/sw/include -c odesolve_utils.c -o 
odesolve_utils.o
g77   -fno-common  -g -O2 -c prja.f -o prja.o
g77   -fno-common  -g -O2 -c solsy.f -o solsy.o
g77   -fno-common  -g -O2 -c stoda.f -o stoda.o
g77   -fno-common  -g -O2 -c vmnorm.f -o vmnorm.o
g77   -fno-common  -g -O2 -c xercnt.f -o xercnt.o
g77   -fno-common  -g -O2 -c xerrwv.f -o xerrwv.o
g77   -fno-common  -g -O2 -c xsetf.f -o xsetf.o
gcc -bundle -flat_namespace -undefined suppress -L/sw/lib -o 
odesolve.so bnorm.o call_lsoda.o cfode.o dgbfa.o dgbsl.o dgefa.o 
dgesl.o ewset.o fdump.o fnorm.o i1mach.o intdy.o j4save.o lsoda.o 
odesolve_utils.o prja.o solsy.o stoda.o vmnorm.o xercnt.o xerrwv.o 
xsetf.o -framework vecLib -L/sw/lib 
-L/usr/local/lib/gcc/powerpc-apple-darwin6.6/3.4 
-L/usr/local/lib/gcc/powerpc-apple-darwin6.6/3.4/../../.. -lfrtbegin 
-lg2c -lSystem -lcc_dynamic 
-L/Users/macq/darwin.apps/R/R-1.8.1/build/bin -lR
ld: warning multiple definitions of symbol _xerbla_
/System/Library/Frameworks/vecLib.framework/vecLib(ProjectBuilderMasterObjectFile.o) 
definition of _xerbla_
/Users/macq/darwin.apps/R/R-1.8.1/build/bin/libR.dylib(print.lo) 
definition of _xerbla_
ld: warning multiple definitions of symbol _i1mach_
i1mach.o definition of _i1mach_ in section (__TEXT,__text)
/Users/macq/darwin.apps/R/R-1.8.1/build/bin/libR.dylib(i1mach.lo) 
definition of _i1mach_
ld: warning multiple definitions of symbol _BC
/sw/lib/libreadline.4.dylib(terminal.so) definition of _BC
/sw/lib/libncurses.5.dylib(lib_termcap.lo) definition of _BC
ld: warning multiple definitions of symbol _UP
/sw/lib/libreadline.4.dylib(terminal.so) definition of _UP
/sw/lib/libncurses.5.dylib(lib_termcap.lo) definition of _UP
ld: warning multiple definitions of symbol _PC
/sw/lib/libreadline.4.dylib(terminal.so) definition of _PC
/sw/lib/libncurses.5.dylib(lib_tputs.lo) definition of _PC
** R
** data
** demo
** inst
** help
  >>> Building/Updating help pages for package 'odesolve'
      Formats: text html latex example
   ccl4data                          text    html    latex   example
   ccl4data.avg                      text    html    latex   example
   lsoda                             text    html    latex   example
   rk4                               text    html    latex   example
* DONE (odesolve)

Delete downloaded files (y/N)? y

>   example('lsoda','odesolve')

## followed by various output and some graphs

At 3:05 PM +0100 2/5/04, Maartje Raijmakers wrote:
>Installing odesolve in Raqua 1.8.0 or 1.8.1 under MacOSX gives the following
>message:
>
>Warning message: Installation of package odesolve had non-zero exit status
>in: install.packages(ui.pkgs, CRAN = getOption(where), lib = .libPaths()[1])
>
>Moreover, in the source of odesolve is no makefile.
>
>Does anyone know how to get a proper installation?
>
>
>Maartje
>
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-- 
--------------------------------------
Don MacQueen
Environmental Protection Department
Lawrence Livermore National Laboratory
Livermore, CA, USA