[R] using Hmisc and Design library
array chip
arrayprofile at yahoo.com
Wed Dec 15 01:14:30 CET 2004
Hi, I encountered a weird problem when using the
Design and Hmisc problem. I have 2 data frame called
"a" and "b", both have 3 columns: "time", "status" and
"scores", a sample of the data frame is like:
data frame "a":
time status scores
1 21 1 99.61
2 38 0 101.11
3 51 0 100.62
4 48 0 87.52
5 78 0 97.18
data frame "b":
time status scores
1 27 0 -126.7
2 24 0 -135.6
3 30 0 -139.5
4 49 0 -137.6
5 27 0 -136.9
when I ran the following using data frame "a",
everything is ok.
> library(Hmisc,T);library(Design,T)
> dd <- datadist(a)
> options(datadist='dd')
> fit <- cph(Surv(time,status) ~ scores,
data=a,surv=T, x=T, y=T)
> fit
Cox Proportional Hazards Model
cph(formula = Surv(time, status) ~ scores, data =
data.combined.testing.set.scores, x = T, y = T,
surv = T)
Obs Events Model L.R. d.f. P Score Score P R2
85 31 7.47 1 0.0063 7.21 0.0072 0.088
coef se(coef) z p
scores 0.0766 0.0287 2.67 0.00752
but when I ran the same script using data frame "b",
even though no error message was produced, no fit
object was generated:
> rm(fit)
> library(Hmisc,T);library(Design,T)
> dd <- datadist(a)
> options(datadist='dd')
> fit <- cph(Surv(time,status) ~ scores,
data=a,surv=T, x=T, y=T)
> fit
Problem: Object "fit" not found, while calling
subroutine S_agsurv2
Use traceback() to see the call stack
can anyone tell me why? no missing value is present in
either data frame.
Thanks
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