[R] memory limit problem
Z P
nusbj at hotmail.com
Mon Apr 5 13:22:47 CEST 2004
we have two server, one is unix (1280M) and linux (2319872k), how can I set
the max?
for the Linux one,
R --max-vsize=2319872k --max-nsize=2319872k
Then I use
>mem.limits()
nsize vsize
NA NA
It seems the limits are not set at all
I want to define an array
>a<-array(0,rep(2,28))
Error: cannot allocate vector of size 2097152 Kb
next I type
>a<-array(0,rep(2,27))
It is ok. then
>a<-array(0,rep(2,28))
Error: vector memory exhausted (limit reached?)
Is there any way to help? In fact, I am now using some array(0,rep(2,21)),
the program run some time then fail, I can not trace what happened since I
run R in batchs under Linux. Does this happen probably due to the memory
exhaust? (for some array(0,rep(2,10)), my codes work well).
>From: Prof Brian Ripley <ripley at stats.ox.ac.uk>
>To: Z P <nusbj at hotmail.com>
>CC: r-help at stat.math.ethz.ch
>Subject: Re: [R] memory limit problem
>Date: Mon, 5 Apr 2004 07:12:02 +0100 (BST)
>
>On Linux, you can set memory limits in the shell you use to run R (via
>command limit or ulimit, depending on the shell).
>
>Yes, there can be a need to set memory limits on Linux too. However, the
>problem was that (apparently, as we have not had a clear report), the
>available memory was not all being used, and that is not seen on Linux (or
>Solaris or ...).
>
>On Mon, 5 Apr 2004, Z P wrote:
>
> > Do you mean in Linux, there is no need to set memory limit? If needed,
>how
> > to set it? Thanks.
>
> > >From: "Roger D. Peng" <rpeng at jhsph.edu>
> > >
> > >In general, this is not an R problem, it is a Windows problem. I find
>that
> > >these types of memory problems do not appear on Linux, for example.
>
>--
>Brian D. Ripley, ripley at stats.ox.ac.uk
>Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/
>University of Oxford, Tel: +44 1865 272861 (self)
>1 South Parks Road, +44 1865 272866 (PA)
>Oxford OX1 3TG, UK Fax: +44 1865 272595
>
>______________________________________________
>R-help at stat.math.ethz.ch mailing list
>https://www.stat.math.ethz.ch/mailman/listinfo/r-help
>PLEASE do read the posting guide!
>http://www.R-project.org/posting-guide.html
More information about the R-help
mailing list