[R] dyn.load error with C file
Jason Sinnwell
Sinnwell.Jason at mayo.edu
Thu Oct 9 16:52:09 CEST 2003
Re-sending this from 10/7. Please help! I'm really clueless how to fix this:
System: Solaris 7, Software: R_1.7.1 for unix
> R CMD INSTALL -l /Rdir/library haplo.stats_1.1.0.tar.gz
-works like a charm-- no syntax errors, etc
But problems are when I'm loading the library within R.
> library(haplo.stats, lib.loc="/people/biostat3/sinnwell/Rdir/library")
> Error in dyn.load(x, as.logical(local), as.logical(now)) :
> unable to load shared library
> "/people/biostat3/sinnwell/Rdir/library/haplo.stats/libs/haplo.stats.so":
> ld.so.1: /opt/tools/R/current-version/lib/R/bin/R.bin: fatal: relocation
> error: file
> /people/biostat3/sinnwell/Rdir/library/haplo.stats/libs/haplo.stats.so: symbol
> errmsg: referenced symbol not found
> Error in library(haplo.stats, lib.loc =
> "/people/biostat3/sinnwell/Rdir/library") :
> .First.lib failed
Within my package I have three C files, one of which I believe is causing the
dynamic library error below.
When I leave out this one C file when building the package, though remaining
R-functions depend on it, the library loads beautifully. We use all Calloc and
Free for double-compatibility with S, so memory allocation is fine. Is there
some issue with C and R that I'm not aware of?
> FYI:
> We have the whole haplo.stats package working in S, INCLUDING that C-file
> Also, zzz.R for haplo.stats package:
>
> .First.lib <- function(lib, pkg) {
> library.dynam("haplo.stats", pkg, lib)
> }
Has anyone dealt with anything similar to this? I see some similar Fortran
error messages...
Thank you for your help,
Jason
-------------------------
Jason P. Sinnwell, M.S.
Mayo Clinic, Rochester
Health Sciences Research
Division of Biostatistics
507.284.3270
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