[R] Running R-program as queue jobs

JFRI (Jesper Frickman) jfri at novozymes.com
Thu Nov 13 14:19:52 CET 2003

A search on Google shows that libpcre.so.0 is a Perl-compatible regular
expression library. Does R use that, or is it the queue script? Have you
checked /usr/lib for that library? Maybe you need to install the library
or rerun ldconfig. You can get info about shared libraries with the ldd

That was some ideas, but no shrink wrapped solutions!

Hilsen Jesper

-----Original Message-----
From: Arne Gjuvsland [mailto:arne.gjuvsland at iha.nlh.no] 
Sent: Thursday, November 13, 2003 5:00 AM
To: r-help at stat.math.ethz.ch
Subject: [R] Running R-program as queue jobs

I have a problem with running my R programs as queue jobs. When I try to
submit a batch file to the queue with qsub I get the following error
message: ____________________________________________________________

/home/gjuvslan/kluster/R-1.7.1/bin/R.bin: error while loading shared
libpcre.so.0: cannot load shared object file: No such file or directory

When executed from the command prompt the batch file does its job.

Any ideas?


More information about the R-help mailing list