[R] Running R-program as queue jobs

Philipp Pagel p.pagel at gsf.de
Thu Nov 13 10:27:12 CET 2003


On Thu, Nov 13, 2003 at 09:59:48AM +0000, Arne Gjuvsland wrote:
> I have a problem with running my R programs as queue jobs. When I try
> to submit a batch file to the queue with qsub I get the following error
> message:
> ____________________________________________________________
> /home/gjuvslan/kluster/R-1.7.1/bin/R.bin: error while loading shared
> libraries: 
> libpcre.so.0: cannot load shared object file: No such file or directory
> ____________________________________________________________
> When executed from the command prompt the batch file does its job.

Did you run the script on the same machine in both cases? I got burnt a
couple of times with different machines running different versions of
the OS, non-identical versions of shared libraries etc...


Dr. Philipp Pagel                                Tel.  +49-89-3187-3675
Institute for Bioinformatics / MIPS              Fax.  +49-89-3187-3585
GSF - National Research Center for Environment and Health
Ingolstaedter Landstrasse 1
85764 Neuherberg, Germany

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