P-value for F from summary.lm (was RE: [R] (no subject))
Liaw, Andy
andy_liaw at merck.com
Mon Jul 7 14:03:43 CEST 2003
[Please use the subject line!]
In the help page for summary.lm, the "Value" section says that the returned
object has a component called "fstatistic", which has the F-statistic and
the associated numerator and denominator degrees of freedom. You can get
the p-value by something like:
fstat <- summary(speciallinearmodel)$fstatistic
pval <- pf(fstat[1], fstat[2], fstat[3], lower.tail=FALSE)
HTH,
Andy
> -----Original Message-----
> From: joerg-burmester at gmx.net [mailto:joerg-burmester at gmx.net]
> Sent: Monday, July 07, 2003 7:50 AM
> To: R-help at stat.math.ethz.ch
> Cc: amaitour at pasteur.fr; bitwrit at ozemail.com.au;
> p.dalgaard at biostat.ku.dk; gregor.gawron at rmf.ch;
> mditzen at zedat.fu-berlin.de
> Subject: [R] (no subject)
>
>
> hi,
>
> can anyone help me about the simple data probability-value of
> the F-test, respectively p-value, shown in the summary of a
> linear model? somehow i can not retrieve this data out of R+
> into my sql-dataset. i can get all other data shown with the command:
> summary(speciallinearmodel) - will have a gui screen
>
> Call:
> lm(formula = y21 ~ x4 + x18 + x4:x18, data =
> clustertransformationstabelle)
> Residuals:
> Min 1Q Median 3Q Max
> -0.20915 -0.07354 -0.01823 0.04414 0.45191
> Coefficients:
> Estimate Std. Error t value Pr(>|t|)
> (Intercept) -0.003613 0.043142 -0.084 0.933450
> x4 0.142373 0.113036 1.260 0.211057
> x18 0.250261 0.127277 1.966 0.052314 .
> x4:x18 0.818618 0.218541 3.746 0.000315 ***
> ---
> Signif. codes: 0 `***' 0.001 `**' 0.01 `*' 0.05 `.' 0.1 ` ' 1
> Residual standard error: 0.1305 on 91 degrees of freedom
> Multiple R-Squared: 0.7865, Adjusted R-squared: 0.7795
> F-statistic: 111.7 on 3 and 91 DF, p-value: < 2.2e-16
>
> but the desired p-value like in this example p-value: <
> 2.2e-16, i somehow can not retrieve by any command like
> attributes(speciallinearmodel). has anyone an idea to get
> this shown but not selectable respectively exportable p-value?
>
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