[R] Re: Compiling R in 64-bit mode on AIX
Dr. Christoph Pospiech
pospiech at de.ibm.com
Mon Dec 8 20:11:32 CET 2003
On Tuesday 14 October 2003 21:05, you wrote:
> Hi. I saw your post from earlier this year in which you were soliciting
> help on compiling R as a 64-bit application under AIX. We have been having
> trouble with the same problem.
>
> Have you gotten anywhere?
>
> Thanks for any help.
>
> Best regards,
>
> Matthew Wiener
> RY84-202
> Applied Computer Science & Mathematics Dept.
> Merck Research Labs
> 126 E. Lincoln Ave.
> Rahway, NJ 07065
> 732-594-5303
Matthew, Liu
first sorry for the delay in answering, but I was buried in an important
project.
I can offer you a solution that was actually found by one of our customers,
Tobias Reber from DKFZ (German Cancer Research Center).
I am appending a patch (generated by cvs diff -c ...) that I applied to R
v1.6.2.
Then I typed the following two commands.
OBJECT_MODE=64 \
MAKE=gmake \
CC="cc -DSTDC" \
CXX="xlC" \
MAIN_LDFLAGS="-Wl,-brtl" \
SHLIB_LDFLAGS="-Wl,-G" \
F77="xlf" \
./configure \
--without-x \
--without-blas
OBJECT_MODE=64 gmake
After this I tested with "gmake check" and found no errors.
I have just retried the above on the following setup.
h/w p690+ 1.7GHz
[tstposp at j36 R]$ oslevel -r
5200-02
[tstposp at j36 R]$ lslpp -l | grep vac.C
vac.C 6.0.0.5 APPLIED C for AIX Compiler
vac.C.readme.ibm 6.0.0.1 COMMITTED C for AIX iFOR/LS Information
vac.C 6.0.0.5 APPLIED C for AIX Compiler
[tstposp at j36 R]$ lslpp -L | grep xlfcmp
xlfcmp 8.1.1.3 A F XL Fortran Compiler
xlfcmp.html.en_US 8.1.1.0 C F XL Fortran Compiler
xlfcmp.idebug.html.en_US 8.1.1.0 C F Distributed Debugger
xlfcmp.msg.en_US 8.1.1.1 A F XL Fortran Compiler
Messages -
xlfcmp.pdf.en_US 8.1.1.0 C F XL Fortran Compiler
xlfcmp.ps.en_US 8.1.1.0 C F XL Fortran Compiler
I copied the r-help mailing list, but I am not sure whether I can post there.
Could you please post this if you don't see it posted ? Thanks.
--
Mit freundlichen Gruessen/Best Regards
Dr. Christoph Pospiech
High Performance & Parallel Computing
Advanced Computing Technology Center
Phone +49-621-469450, Fax: ...-469200, eMail: pospiech at de.ibm.com
Mobile +49-171 765 5871
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