[R] gregmisc

[atsuya fujito]

Thank you, Marc;

I installed "car", "R commander" and "Bioconductor".
I am using R 1.7.1, on MAC OSX 10.2.6

 > library()
Packages in library '/usr/local/lib/R/library':

AnnBuilder              Bioconductor annotation data package builder
Biobase                 Biobase: Base functions for Bioconductor
DynDoc                  Dynamic document tools
RBGL                    Test interface to boost C++ graph lib
ROC                     utilities for ROC, with uarray focus
Rcmdr                   R Commander
Ruuid                   Ruuid: Provides Universally Unique ID values
SAGElyzer               A package that deals with SAGE libraries
affy                    Methods for Affymetrix Oligonucleotide Arrays
affycomp                Graphics Toolbox for Assessment of Affymetrix
                         Expression Measures
affydata                Affymetrix Data for Demonstration Purpose
annotate                Annotation for microarrays
base                    The R base package
car                     Companion to Applied Regression
ctest                   Classical Tests
eda                     Exploratory Data Analysis
edd                     expression density diagnostics
genefilter              Genefilter: filter genes
geneplotter             Geneplotter: plot microarray data
golubEsets              exprSets for golub leukemia data
graph                   graph: A package to handle graph data
                         structures
gregmisc                Greg's Miscellaneous Functions
grid                    The Grid Graphics Package
lattice                 Lattice Graphics
limma                   Linear Models for Microarray Data
lqs                     Resistant Regression and Covariance Estimation
makecdfenv              CDF Environment Maker
marrayClasses           Classes and methods for cDNA microarray data
marrayInput             Data input for cDNA microarrays
marrayNorm              Location and scale normalization for cDNA
                         microarray data
marrayPlots             Diagnostic plots for cDNA microarray data
Packages in library '/usr/local/lib/R/library':

AnnBuilder              Bioconductor annotation data package builder
Biobase                 Biobase: Base functions for Bioconductor
DynDoc                  Dynamic document tools
RBGL                    Test interface to boost C++ graph lib
ROC                     utilities for ROC, with uarray focus
Rcmdr                   R Commander
Ruuid                   Ruuid: Provides Universally Unique ID values
SAGElyzer               A package that deals with SAGE libraries
affy                    Methods for Affymetrix Oligonucleotide Arrays
affycomp                Graphics Toolbox for Assessment of Affymetrix
                         Expression Measures
affydata                Affymetrix Data for Demonstration Purpose
annotate                Annotation for microarrays
base                    The R base package
car                     Companion to Applied Regression
ctest                   Classical Tests
eda                     Exploratory Data Analysis
edd                     expression density diagnostics
genefilter              Genefilter: filter genes
geneplotter             Geneplotter: plot microarray data
golubEsets              exprSets for golub leukemia data
graph                   graph: A package to handle graph data
                         structures
gregmisc                Greg's Miscellaneous Functions
grid                    The Grid Graphics Package
lattice                 Lattice Graphics
limma                   Linear Models for Microarray Data
lqs                     Resistant Regression and Covariance Estimation
makecdfenv              CDF Environment Maker
marrayClasses           Classes and methods for cDNA microarray data
marrayInput             Data input for cDNA microarrays
marrayNorm              Location and scale normalization for cDNA
                         microarray data
marrayPlots             Diagnostic plots for cDNA microarray data
marrayTools             Miscellaneous functions for cDNA microarrays
methods                 Formal Methods and Classes
modreg                  Modern Regression: Smoothing and Local Methods
multtest                Multiple Testing Procedures
mva                     Classical Multivariate Analysis
nlme                    Linear and nonlinear mixed effects models
nls                     Nonlinear regression
reposTools              Repository tools for R
sma                     Statistical Microarray Analysis
splines                 Regression Spline Functions and Classes
stepfun                 Step Functions, including Empirical
                         Distributions
survival                Survival analysis, including penalised
                         likelihood.
tcltk                   Tcl/Tk Interface
tkWidgets               R based tk widgets
tools                   Tools for package development
ts                      Time series functions
vsn                     Variance stabilization and calibration for
                         microarray data
widgetTools             Creates an interactive tcltk widget
xtable                  Export tables to LaTeX or HTML