[R] RMySQL_0.5-0 installation problem
Matthias Burger
matthias.burger at epigenomics.com
Fri Oct 4 08:58:24 CEST 2002
Hi,
in the process of upgrading to R 1.6.0 I tried to install the latest RMySQL
(0.5-0) package (Omegahat).
The following error was reported
[...]
gcc -I/mnt/local/R/R-1.6.0/lib/R/include -I/usr/include/mysql
-I/usr/local/include -D__NO_MATH_INLINES -mieee-fp -fPIC -g -O2 -c RS-MySQL.c
-o RS-MySQL.o
RS-MySQL.c: In function `RS_MySQL_newConnection':
RS-MySQL.c:203: `MYSQL_OPT_LOCAL_INFILE' undeclared (first use in this
function)RS-MySQL.c:203: (Each undeclared identifier is reported only once
RS-MySQL.c:203: for each function it appears in.)
make: *** [RS-MySQL.o] Error 1
ERROR: compilation failed for package 'RMySQL'
Any hint on what to try next would be highly appreciated.
Regards,
Matthias
sys info:
This is on a Athlon 900 host with debian 3.0 (testing), kernel 2.4.19
MySQL packages libmysqlclient10 + libmysqlclient10-dev installed
$ mysql -V
mysql Ver 11.15 Distrib 3.23.47, for pc-linux-gnu (i686)
R version, built from source, make & check OK
_
platform i686-pc-linux-gnu
arch i686
os linux-gnu
system i686, linux-gnu
status
major 1
minor 6.0
year 2002
month 10
day 01
language R
--
Matthias Burger
Bioinformatics R&D
Epigenomics AG www.epigenomics.com
Kleine Pr?sidentenstra?e 1 fax: +49-30-24345-555
10178 Berlin Germany phone: +49-30-24345-0
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