[R] Help massaging big arrays

Thomas Lumley tlumley at u.washington.edu
Thu Aug 1 17:15:35 CEST 2002


On Fri, 2 Aug 2002, Philip Rhoades wrote:

> Hi all,
>
> I hope someone can give me some quick pointers - it would take me ages
> to work this out from scratch - I want to:
>
> - From an array - 32 cols x 1000 rows of small floats

Call it X

> - Produce a second array from the first where the all numbers have an
> abs fn applied to them (to get rid of the neg numbers)

X <- abs(X)

> - Produce a third array from the second where all numbers less than
> 0.0005 are converted to 0.0005

X[X<0.005] <- 0.005

> - Produce a fourth array (5x1000) from the third where the first number
> in the row is the mean of the first two numbers of array #3, the second
> number is the mean of the first 4 numbers, 3rd mean of 8, 4th mean of
> 16, 5th mean of 32

Y<-matrix(ncol=5,nrow=1000)
for(i in 1:5)
    Y[,i] <- rowMeans(X[ ,1:(2^i)])

> - Produce a fifth (5x1000) array by dividing array #4 into another
> 5x1000 array

Y <- Z/Y

> - Produce 5 means of the 5 columns of array #5

colMeans(Y)


	-thomas

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