[R] Problem compiling on HP-UX 10.20
Nuzzo Art-CINT116
A.Nuzzo at motorola.com
Fri Apr 19 18:30:13 CEST 2002
Thanks for the help. I am getting closer. Switching to the fort77 compiler
fixed that problem. Now it compiles completely but I am unable to run the
check.
artn at bs752> make check
make[1]: Entering directory `/tmp_mnt/users/artn/R-1.4.1/tests'
make[2]: Entering directory `/tmp_mnt/users/artn/R-1.4.1/tests'
make[3]: Entering directory `/tmp_mnt/users/artn/R-1.4.1/tests/Examples'
make[4]: Entering directory `/tmp_mnt/users/artn/R-1.4.1/tests/Examples'
make[4]: Leaving directory `/tmp_mnt/users/artn/R-1.4.1/tests/Examples'
make[4]: Entering directory `/tmp_mnt/users/artn/R-1.4.1/tests/Examples'
make[4]: *** Warning: File `Makefile' has modification time in the future
(2002-04-19 11:17:56 > 2002-04-19 11:17:53)
collecting examples for package `base' ...
make[5]: Entering directory `/tmp_mnt/users/artn/R-1.4.1/src/library'
>>> Building/Updating help pages for package `base'
Formats: text example
make[5]: Leaving directory `/tmp_mnt/users/artn/R-1.4.1/src/library'
running code in `base-Ex.R' ...make[4]: *** [base-Ex.Rout] Error 1
make[4]: Leaving directory `/tmp_mnt/users/artn/R-1.4.1/tests/Examples'
make[3]: *** [test-Examples] Error 2
make[3]: Leaving directory `/tmp_mnt/users/artn/R-1.4.1/tests/Examples'
make[2]: *** [test-Examples] Error 2
make[2]: Leaving directory `/tmp_mnt/users/artn/R-1.4.1/tests'
make[1]: *** [test-all-basics] Error 1
make[1]: Leaving directory `/tmp_mnt/users/artn/R-1.4.1/tests'
make: *** [check] Error 2
artn at bs752>
Initially I tried with the default compiler flags and then with CFLAGS=-O
and also tried with CXXFLAGS=-O with the same results. My current
configuration is:
R is now configured for hppa2.0-hp-hpux10.20
Source directory: .
Installation directory: /users/artn
C compiler: gcc -D_HPUX_SOURCE -O
C++ compiler: c++ -O
FORTRAN compiler: fort77 -g
X11 support: yes
Gnome support: no
Tcl/Tk support: no
R profiling support: yes
R as a shared library: no
configure: warning: you cannot build DVI versions of the R manuals
configure: warning: you cannot build PDF versions of the R manuals
Thanks for any help,
Art Nuzzo
> -----Original Message-----
> From: Luke Tierney [mailto:luke at stat.umn.edu]
> Sent: Thursday, April 18, 2002 9:28 AM
> To: Nuzzo Art-CINT116
> Subject: Re: [R] Problem compiling on HP-UX 10.20
>
>
> Have a look at the notes on HP-UX in the R-admin manual. In nutshell,
> you will either need to make sure libg2c is compiled with PIC flags or
> use the HP compiler fort77.
>
> luke
>
> On Thu, Apr 18, 2002 at 09:16:58AM -0500, Nuzzo Art-CINT116 wrote:
> > I am having a problem compiling R on an HP-UX 10.20 system
> using gcc/g77
> > compiler. It appears to compile without problems until it
> gets to the lapack
> > module and I get the following error:
> >
> > gcc -I. -I../../../src/include -I../../../src/include
> -I/usr/local/include
> > -DHAVE_CONFIG_H -D_HPUX_SOURCE -fPIC -O2 -c Lapack.c -o Lapack.lo
> > g77 -fPIC -O2 -c double.f -o double.lo
> > g77 -fPIC -O2 -c cmplx.f -o cmplx.lo
> > g77 -fPIC -O2 -c blas2.f -o blas2.lo
> > g77 -fPIC -O2 -c cmplxblas.f -o cmplxblas.lo
> > gcc -shared -fPIC -o lapack.sl Lapack.lo double.lo
> cmplx.lo blas2.lo
> > cmplxblas.lo -lg2c -lm -L/lib/pa1.1 -L/usr/lib/pa1.1 -u main
> > -L/opt/gnu/lib/gcc-lib/hppa2.0-hp-hpux10.20/3.0.4 -L/usr/ccs/bin
> > -L/usr/ccs/lib -L/opt/langtools/lib
> > -L/opt/gnu/lib/gcc-lib/hppa2.0-hp-hpux10.20/3.0.4/../../.. -lm
> > -L/usr/local/lib -lz -ltermcap -lm
> > /usr/ccs/bin/ld: DP relative code in file
> >
> /opt/gnu/lib/gcc-lib/hppa2.0-hp-hpux10.20/3.0.4/libg2c.a(fmt.o
> ) - shared
> > library must be position
> > independent. Use +z or +Z to recompile.
> > collect2: ld returned 1 exit status
> > make[4]: *** [lapack.sl] Error 1
> > make[4]: Leaving directory
> `/tmp_mnt/users/artn/R-1.4.1/src/modules/lapack'
> >
> >
> > Any help is appreciated, thanks,
> >
> >
> > Art Nuzzo
> >
> >
> >
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> --
> Luke Tierney
> University of Minnesota Phone:
> 612-625-7843
> School of Statistics Fax:
> 612-624-8868
> 313 Ford Hall, 224 Church St. S.E. email:
> luke at stat.umn.edu
> Minneapolis, MN 55455 USA WWW:
http://www.stat.umn.edu
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