[R] installing RMySQL
Jens Nieschulze
jniesch at gwdg.de
Wed Sep 26 11:45:18 CEST 2001
Hi, I have struggled to re-implement the RMySQL package after upgrading
from SuSe 6.3 to 7.2 and from R 1.2.1 to R 1.3.1,
to no avail
It compiles happily but when loading the package I get the following
error
> library(RMySQL)
Error in dyn.load(x, as.logical(local), as.logical(now)) :
unable to load shared library
"/home/jniesch/R_HOME/lib/R/library/RMySQL/libs/RMySQL.so":
libmysqlclient.so.10: cannot load shared object file: No such file or
directory
Error in library(RMySQL) : .First.lib failed
//////////////////////////////////////////////////////////
I don't understand why, the shared library hasn't moved
and the path has been added to /etc/ld.so.conf
it even seems to me that the library is found during
the installation procedure
I have tried for two days now and would be very delighted
if somebody could give me a hint.
thanks in advance
Jens
//////////////////////////////////////////////////////////
root at ufobig:/home/downloads > find / -name *mysqlclient.so*
/usr/local/lib/mysql/libmysqlclient.so.10.0.0
/usr/local/lib/mysql/libmysqlclient.so.10
/usr/local/lib/mysql/libmysqlclient.so
/usr/local/MySQL/libmysql/.libs/libmysqlclient.so.10.0.0
/usr/local/MySQL/libmysql/.libs/libmysqlclient.so.10
/usr/local/MySQL/libmysql/.libs/libmysqlclient.so
/home/libmysqlclient.so
/home/libmysqlclient.so.10
/home/libmysqlclient.so.3.21.33b
/home/libmysqlclient.so.4
/////////////////////////////////////////////////////////////
jniesch at ufobig:~/R_HOME > R CMD INSTALL
/home/downloads/RMySQL_0.4-2.tar.gz
Installing source package `RMySQL' ...
creating cache ./config.cache
checking how to run the C preprocessor... cc -E
checking for mysql_init in -lmysqlclient... no
checking for mysql_init in -lmysqlclient... yes
checking for /usr/include/mysql.h... no
checking for /usr/include/mysql/mysql.h... no
checking for /usr/local/include/mysql.h... no
checking for /usr/local/include/mysql/mysql.h... yes
updating cache ./config.cache
creating ./config.status
creating src/Makevars
libs
gcc -I/home/jniesch/R_HOME/lib/R/include -I/usr/local/include/mysql
-I/usr/local/include -mieee-fp -D__NO_MATH_INLINES -fPIC -g -O2 -c
RS-DBI.c -o RS-DBI.o
gcc -I/home/jniesch/R_HOME/lib/R/include -I/usr/local/include/mysql
-I/usr/local/include -mieee-fp -D__NO_MATH_INLINES -fPIC -g -O2 -c
RS-MySQL.c -o RS-MySQL.o
gcc -shared -o RMySQL.so RS-DBI.o RS-MySQL.o -L/usr/local/lib/mysql
-lmysqlclient -lz -L/usr/local/lib
R
inst
help
>>> Building/Updating help pages for package `RMySQL'
Formats: text html latex example
MySQL text html latex example
[snip]
DONE (RMySQL)
DONE (INSTALL)
/////////////////////////////////////////////////////////////
> version
_
platform i686-pc-linux-gnu
arch i686
os linux-gnu
system i686, linux-gnu
status
major 1
minor 3.1
year 2001
month 08
day 31
language R
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