[R] seg fault with mclust
Andy Jacobson
andyj at splash.princeton.edu
Wed Oct 31 19:06:10 CET 2001
Howdy,
I'm experiencing a segmentation fault when trying to load
mclust.so from mclust-1.1-4. I'm using R-1.3.1 on RedHat 6.2,
and `gcc --version` reports "egcs-2.91.66".
Any ideas?
-Andy
Package install:
> install.packages("mclust")
[stuff omitted]
Installing source package `mclust' ...
libs
g77 -fPIC -g -O2 -c blapack.f -o blapack.o
g77 -fPIC -g -O2 -c mclust.f -o mclust.o
gcc -shared -o mclust.so blapack.o mclust.o -L/usr/local/lib -lg2c -lm -L/usr/lib/gcc-lib/i386-redhat-linux/egcs-2.91.66 -L/usr/i386-redhat-linux/lib -lm
[stuff omitted]
DONE (mclust)
DONE (INSTALL)
Delete downloaded files (y/N)? y
Warning message:
argument `lib' is missing: using /home/splash/andyj/lib/R in: install.packages("mclust")
> library("mclust")
Segmentation fault (core dumped)
"Verbose" session showing dyn.load seg fault:
~> R --verbose
R : Copyright 2001, The R Development Core Team
Version 1.3.1 (2001-08-31)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type `license()' or `licence()' for distribution details.
R is a collaborative project with many contributors.
Type `contributors()' for more information.
Type `demo()' for some demos, `help()' for on-line help, or
`help.start()' for a HTML browser interface to help.
Type `q()' to quit R.
[Previously saved workspace restored]
lnow dyn.load(/usr/local/lib/R/library/ctest/libs/ctest.so)..
i >R_ReplConsole(): before "for(;;)" {main.c}
> library(mclust)
Garbage collection 1 = 0+0+1 (level 2) ...
135144 cons cells free (33%)
5.7 Mbytes of heap free (94%)
now dyn.load(/home/splash/andyj/lib/R/mclust/libs/mclust.so)..
Segmentation fault (core dumped)
Andy Jacobson
andyj at splash.princeton.edu
Program in Atmospheric and Oceanic Sciences
Sayre Hall, Forrestal Campus
Princeton University
PO Box CN710 Princeton, NJ 08544-0710 USA
Tel: 609/258-5260 Fax: 609/258-2850
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