[R] Slow printing in batch?
BXC (Bendix Carstensen)
bxc at novonordisk.com
Wed Nov 21 16:19:08 CET 2001
For doumentation purposes I run a batch R program that does reshaping etc.
of data and finally prints things.
When I paste the code into an R-window everything runs in a few seconds,
but in Batch mode i get in the output file the result below.
Any clues why R uses 4 min to print a 1129\times 6 dataframe in batch mode?
The scrit I use to run R is:
c:\stat\r\%R_VERS%\bin\Rterm --no-restore --no-save -q < %1.R > %1.Rl
and in the .Rl file i get:
....
> Sys.time()
[1] "2001-11-21 16:00:23 Romance Standard Time"
>
> summary( hbl )
sample lab dev cal day
HbA1c%
0289 3962: 50 SDC:1055 nyTosoh :470 BioRad :135 Min. :1.0
Min. : 4.700
0308 5530: 25 AAS: 74 Tosoh : 74 DEKS-0521:577 1st Qu.:6.0 1st
Qu.: 7.300
0303 9481: 25 V2BioRad:450 DEKS-1321:276 Median :7.0
Median : 8.200
0303 8453: 25 VCBioRad:135 Tosoh :141 Mean :6.8
Mean : 8.583
0299 7761: 25 3rd Qu.:8.0 3rd
Qu.:10.000
0294 7744: 25 Max. :9.0
Max. :13.700
(Other) :954
>
> Sys.time()
[1] "2001-11-21 16:00:27 Romance Standard Time"
>
> hbl
sample lab dev cal day HbA1c%
1 0294 7744 SDC VCBioRad DEKS-0521 6 7.9
2 0294 7744 SDC VCBioRad DEKS-0521 7 7.8
3 0294 7744 SDC VCBioRad DEKS-0521 8 7.7
4 0294 7744 SDC V2BioRad BioRad 6 8.0
(deleted lines)
1171 10322 SDC nyTosoh DEKS-1321 6 10.7
1172 10322 SDC nyTosoh DEKS-1321 7 10.7
1173 10322 SDC nyTosoh DEKS-1321 8 10.7
>
> Sys.time()
[1] "2001-11-21 16:04:41 Romance Standard Time"
I use:
_
platform i386-pc-mingw32
arch x86
os Win32
system x86, Win32
status
major 1
minor 3.1
year 2001
month 08
day 31
language R
----------------------
Bendix Carstensen
Senior Statistician
Steno Diabetes Centre
Niels Steensens Vej 2
DK-2820 Gentofte
Denmark
tel: +45 44 43 87 38
mob: +45 28 25 87 38
fax: +45 44 43 73 13
bxc at novonordisk.com
www.biostat.ku.dk/~bxc
----------------------
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