[R] failure in make check
Don MacQueen
macq at llnl.gov
Thu May 31 18:31:41 CEST 2001
I have a failure in 'make check' and I would appreciate assistance
regarding what to do about it.
Thanks
-Don
Installing R-1.2.3 on
build[99]% uname -sr
SunOS 5.8
(for those who may recall my previous request for help, I have
updated GCC to 2.95.3, and configured with gcc, GCC's c++, and f77
[not g77])
Running 'make check' got this:
creating `no-segfault.R'
running `no-segfault.R'
*** Error code 138
make: Fatal error: Command failed for target `no-segfault.Rout'
Current working directory /erd/statistic/apps/R/R-1.2.3/build/tests
*** Error code 1
make: Fatal error: Command failed for target `test-Specific'
Current working directory /erd/statistic/apps/R/R-1.2.3/build/tests
*** Error code 1
make: Fatal error: Command failed for target `test-All'
Current working directory /erd/statistic/apps/R/R-1.2.3/build/tests
*** Error code 1
make: Fatal error: Command failed for target `test-All'
------ details ------
As described in INSTALL:
You do not necessarily have to build R in the top-level source directory
(say, TOP_SRCDIR). To build in BUILDDIR, cd there and run
TOP_SRCDIR/configure
make
TOP_SRCDIR is: longpath/R/R-1.2.3/source
BUILDDIR is: longpath/R/R-1.2.3/build
I'm using Sun's make, but INSTALL indicates this is ok for SunOS 5.8.
Near the beginning of no-segfault.Rout is this:
>
> ## ! :
> f <- get("!", pos = 4)
> f()
Error: binary operations require two arguments
> f(NULL)
Error in f(NULL) : invalid argument type
Followed by more expressions and more error messages. There are many,
many Errors reported in this (very long) file.
Near the end, the last comment indicating, if I understand correctly,
what's being tested, I find
>
> ## loess.control :
> f <- get("loess.control", pos = 2)
... lines that look ok omitted ...
> f(l0)
Error in all(arg == choices) : Object "l0" not found
> f(c0)
Error in all(arg == choices) : Object "c0" not found
> f(df0)
Error in all(arg == choices) : Object "df0" not found
> f(F)
Error in pmatch(x, table, duplicates.ok) :
argument is not of mode character
> f(list(),list())
$surface
[1] "interpolate"
$statistics
[1] "approximate"
$trace.hat
[1] "exact"
$cell
[1] 0.2
$iterations
[1] 4
The file ends at this point, so apparently it didn't run the rest of
the input file. That is, no-segfault.R continues with
## loess.smooth :
but this doesn't appear in no-segfault.Rout.
I haven't found a file named no-segfault.Rout.save to tell me what
the Rout should look like.
--
--------------------------------------
Don MacQueen
Environmental Protection Department
Lawrence Livermore National Laboratory
Livermore, CA, USA
--------------------------------------
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