[R] Is ther a possibility to display the log(frequency) instead of the frequency in the hist plot?

[Uwe Ligges]

Witold Eryk Wolski wrote:
> 
> Uwe Ligges wrote:
> 
> > Witold Eryk Wolski wrote:
> > >
> > >  Is there a possibility to display the log(frequency) instead of the
> > > frequency in the hist?
> >
> > I think you want something like the following example:
> >
> >  x <- runif(100) * 10
> >  my.hist <- hist(x)
> >  my.hist   # have a look at the values!
> >  my.hist$counts <- log(my.hist$counts, 10)  # logarithm with base 10
> >  plot(my.hist)  # now plot it again with log(frequency)
> >
> > Uwe Ligges
> >
> 
> Hi Uwe!
> First thanks for your answer.
> Some questions still remain to me.
> 1. How take an log if one of the my.hist$counts equals 0?

You want to use a histogram, so you have to think about what you want to
do in that case.


> 2. You code expample produces an error message which i doesnt understand.
> > plot(my.hist)  # now plot it again with log(frequency)
> Error in plot.window(xlim, ylim, log, asp, ...) :
>         invalid xlim

??? 
No, cannot reproduce it with my example! 


> 3. I tried as workaround something similar.
> plot(my.hist$mids,log(my.hist$counts),type="s") And this would work quite good for
> my needs.
> But problem with log(0) = -Inf still remains.

So we have to change the mathematical axioms. ;-)


> I think I have to formulate my question more general. Why, and this is an question
> which I am asking myself since
> I am started using  R becouse im using the hist plot quite often,  the hist plot in
> the base package has no similar
> options like eg. the histogram plot in XMGR?
> 
> THX
> Eryk

Uwe Ligges
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