[R] sink() does not seem to release the file
Prof Brian Ripley
ripley at stats.ox.ac.uk
Tue Jan 2 12:33:10 CET 2001
To add to that, this behaviour has been changed in the R-patched version
(and hence for 1.2.1): from NEWS/BUG FIXES
o Explicitly close files opened by sink() for OSes (such as
Windows) that benefit from it.
In other words, sink() will close the connection for you.
On 2 Jan 2001, Peter Dalgaard BSA wrote:
> "BXC (Bendix Carstensen)" <bxc at novonordisk.com> writes:
>
> > I run Win2000, and when I try to write to a file and later use it
> > it seems that R 1.02.0 has a firm grip on it:
>
> [Proof deleted]
>
> This was on the R-devel list 2 weeks ago:
>
> On Tue, 19 Dec 2000, Prof Brian D Ripley wrote:
>
> > On Tue, 19 Dec 2000 Setzer.Woodrow at epamail.epa.gov wrote:
> >
> > > When I use sink(filename) to save the results of the run, the file
> > > does not seem to be closed or released back to the OS after I issue
> > > the "sink()" command. Here is a baby example:
> >
> > sink works on connections, not files, as from 1.2.0.
> >
> > > sink("test.txt")
> > > tdta <- data.frame(x = x <- 0:10,y = 2 * x + rnorm(11))
> > >
> > > print(summary(lm(y ~ x, data=tdta)))
> > > sink()
> > >
> > > At this point (even after refreshing the Explorer window) the filesize of
> > > "test.txt" is listed as 0 bytes, and as long as Rgui is running, I
> > > cannot delete the file. Emacs cannot read the file (but Notepad can). This happens both in the gui
> > > and when the commands are in a file run via "source()".
> >
> > Yes, but what is the bug exactly? The connection is still open so you can
> > switch output back to it. If you want different behaviour, you can open a
> > connection and close it yourself. As in
> >
> > zz <- file("test.txt", "w")
> > sink(zz)
> > tdta <- data.frame(x = x <- 0:10,y = 2 * x + rnorm(11))
> > print(summary(lm(y ~ x, data=tdta)))
> > sink()
> > close(zz)
>
> --
> O__ ---- Peter Dalgaard Blegdamsvej 3
> c/ /'_ --- Dept. of Biostatistics 2200 Cph. N
> (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918
> ~~~~~~~~~~ - (p.dalgaard at biostat.ku.dk) FAX: (+45) 35327907
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--
Brian D. Ripley, ripley at stats.ox.ac.uk
Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/
University of Oxford, Tel: +44 1865 272861 (self)
1 South Parks Road, +44 1865 272860 (secr)
Oxford OX1 3TG, UK Fax: +44 1865 272595
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