[R] Object size in bytes
Nicholas Lewin-Koh
kohnicho at comp.nus.edu.sg
Sat Sep 2 06:27:30 CEST 2000
Thanks,
I think i threw this one out off the cuff without thinking about it too
deeply. What I had in mind was to compare the same data stored in two
different formats to see which was more space efficient.
So to rephrase my question.
for a set of doubles (say two columns) and some information about them
which storage mode would be the most efficient:
a single listwith the attributes and columns as elements of the list.
a matrix with attributes.
a list with attributes.
So I believe fo my question Dr. Ripley's points are very pertinent. Which
structures have more overhead.
Thank you again
for the informative fast replies.
Nicholas
On Fri, 1 Sep 2000, Prof Brian D Ripley wrote:
> On 1 Sep 2000, Peter Dalgaard BSA wrote:
>
> > Nicholas Lewin-Koh <kohnicho at comp.nus.edu.sg> writes:
> >
> > > Hi,
> > > Is there a command that will give the total size of an R object in bytes?
> >
> > No. You can get some of the way with
> >
> > function (it)
> > {
> > x1 <- gc()[, 1]
> > copy <- it
> > x2 <- gc()[, 1]
> > x1 - x2 - c(5, 6) # correct for variables and function call (fudged)
> > }
> >
> > > x<-rnorm(20000)
> > > sizeit(x)
> > Ncells Vcells
> > 1 20000
> > > names(x)<-1:20000
> > > sizeit(x)
> > Ncells Vcells
> > 3 30001
> >
> > And from there on things become system dependent. On x386 (Linux and
> > also Windows IIRC) an Ncell is 20 bytes and a Vcell is 8.
>
> Isn't this going to fail in 1.2.0? Not only is the workspace size
> not fixed, but also the garbage collector does not clean out in one pass.
> (And the size of Ncells changes with that version.)
>
> Also, to what extent does R share parts of objects (e.g. lists) without
> copying them? (S does quite extensively.)
>
>
> I would have thought one reasonable approximate answer was to dump the
> object in binary save format and look at the file size.
>
> --
> Brian D. Ripley, ripley at stats.ox.ac.uk
> Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/
> University of Oxford, Tel: +44 1865 272861 (self)
> 1 South Parks Road, +44 1865 272860 (secr)
> Oxford OX1 3TG, UK Fax: +44 1865 272595
>
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