[R] problem on upgrading to RH6.2 (was problem with ts pack

Peter Dalgaard BSA p.dalgaard at biostat.ku.dk
Thu May 25 12:21:44 CEST 2000


Jari Oksanen <jhoksane at ecology.helsinki.fi> writes:

> I have similar problems with R 1.0.1 on RH6.2 (pre-compiled rpm binaries). 
> Some of the old packages ceased to work and when I tried to re-install them 
> through `R INSTALL package.tar.gz', some just fail and give similar error 
> messages. My `ts' works, but it is of the old original version, and I don't 
> dare to check if it stops working after re-installation. However, re-installed 
> `tripack' gives the following error message:
> 
>  > library(tripack)
> Error in dyn.load(x, as.logical(local), as.logical(now)) : 
> 	unable to load shared library "/usr/lib/R/library/tripack/libs/tripack.so":
>   /usr/lib/R/library/tripack/libs/tripack.so: undefined symbol: ó
> 

You're doing better than me, I just get a segfault... It seems that
something is seriously wrong with dyn.loading Fortran on RH6.2.
Upgrading the C/Fortran compilers to gcc 2.95.1 or newer seems to cure
it.

I'll be d**ned if I can figure out what is going wrong, but .so files
created with  2.95.1 work with R compiled with egcs-1.1.2 and .so
files created with egcs-1.1.2 cause segfaults when used with R
compiled with 2.95.1, so the problem is likely in the shared libraries
themselves. 

-- 
   O__  ---- Peter Dalgaard             Blegdamsvej 3  
  c/ /'_ --- Dept. of Biostatistics     2200 Cph. N   
 (*) \(*) -- University of Copenhagen   Denmark      Ph: (+45) 35327918
~~~~~~~~~~ - (p.dalgaard at biostat.ku.dk)             FAX: (+45) 35327907
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