[R] outer problem

Thomas Lumley thomas at biostat.washington.edu
Mon Jun 19 19:52:37 CEST 2000

On Mon, 19 Jun 2000, Erich Neuwirth wrote:

> why does teh following code not work?
> a<-rnorm(50)
> dim(a)<-c(10,5)
> mycov<-function(mat,i,j){
>             sum((mat[,i]-mean(mat[,i]))*(mat[,j]-mean(mat[,j])))
>             }
> covmat<-function(X){
>         outer(1:dim(X)[2],1:dim(X)[2],function(v1,v2){mycov(X,v1,v2)})} 
> from what i know
> covmat(a) should give the covariance matrix of a, but it gives a matrix
> with
> constant elements.
> mycov(a,1,2) ans simlar calls are doing the right thing.
> so somehow i am misunderstanding outer here.

You're misunderstanding outer().

outer(x,y,f) does just one call to f with arguments created by stacking x
and y together in the right way, so f has to be vectorised.

In any case, var(X) returns the covariance matrix of X, much more


Thomas Lumley
Assistant Professor, Biostatistics
University of Washington, Seattle

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