[R] My first R program

[Shai Shen-Orr]

Hi, 

Sorry to bother you  guys with this syntax problem, this is my first R
program, and I seem to not have grasped something right.  I keep getting
an error message from 'parse' on the line with the *** :

pValCalculator(b, n=20, m=20)
{
	ind <- 1:min(c(n,m))
	prob <- (1-pnorm(b,sd=std*sqrt(ind)))
	prob1 <- sum((n-ind+1)*(m-ind+1)*prob)
	prob1
}

inputData <-
scan("/users/lvssso/projects/LAMA/output/pValLamaScore.tmp", list(block1
= "",block2 = "",width1 = 0,width2 = 0,alignment = 0,score = 0));


pVal <- vector(mode = "numeric", length(lamaScore));

for(i in 1:length(inputData$lamaScore)
*****	pVal[i] <- pValCalculator(inputData$score, inputData$width1,
inputData$width2);

inputData$pValue <- list(pVal);

write.table(inputData, file = "pValLamaScore.out", row.names = FALSE,
col.names = FALSE, sep = "\t");



Thanks,


	Shai

-- 
Shai Shen-Orr          
Crown Human Genome Center and Bioinformatics Unit,
Weizmann Institute of Science
Home page and more contact info: http://bioinfo.weizmann.ac.il/~lvssso
-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-
r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html
Send "info", "help", or "[un]subscribe"
(in the "body", not the subject !)  To: r-help-request at stat.math.ethz.ch
_._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._._