Hola buenas,

utlimamente estoy teniendo más problemas con mi equipo de los que debería.
Bajo windows no me funciona bien Rstudio y bajo linux soy incapaz de
instalar rJava. ¿Alguien que sepa de Linux me podría ayudar?

He probado a instalar los openJDK y nada.

También he probado, para instalar Java, a hacer un:

sudo add-apt-repository ppa:webupd8team/java

sudo apt-get update && sudo apt-get install oracle-java7-installer

Y luego cuando le digo a R (vamos que no me lo instala):

> install.packages("rJava")
Installing package(s) into
‘/home/hermesh/R/x86_64-pc-linux-gnu-library/2.15’
(as ‘lib’ is unspecified)
probando la URL 'http://cran.rstudio.com/src/contrib/rJava_0.9-3.tar.gz'
Content type 'application/x-gzip' length 537153 bytes (524 Kb)
URL abierta
==================================================
downloaded 524 Kb

* installing *source* package ‘rJava’ ...
** package ‘rJava’ successfully unpacked and MD5 sums checked
checking for gcc... gcc -std=gnu99
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -std=gnu99 -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/wait.h that is POSIX.1 compatible... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for string.h... (cached) yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking for unistd.h... (cached) yes
checking for an ANSI C-conforming const... yes
checking whether time.h and sys/time.h may both be included... yes
configure: checking whether gcc -std=gnu99 supports static inline...
yes
checking whether setjmp.h is POSIX.1 compatible... yes
checking whether sigsetjmp is declared... yes
checking whether siglongjmp is declared... yes
checking Java support in R... present:
interpreter : '/usr/bin/java'
archiver    : '/usr/bin/jar'
compiler    : '/usr/bin/javac'
header prep.: '/usr/bin/javah'
cpp flags   : '-I/usr/lib/jvm/java-7-openjdk-amd64/jre/../include'
java libs   : '-L/usr/lib/jvm/java-7-openjdk-amd64/jre/lib/amd64
-L/usr/lib/jvm/java-7-openjdk-amd64/jre/lib/amd64/server -ljvm'
checking whether JNI programs can be compiled... yes
checking JNI data types... ok
checking whether JRI should be compiled (autodetect)... yes
checking whether debugging output should be enabled... no
checking whether memory profiling is desired... no
checking whether threads support is requested... no
checking whether callbacks support is requested... no
checking whether JNI cache support is requested... no
checking whether JRI is requested... yes
configure: creating ./config.status
config.status: creating src/Makevars
config.status: creating R/zzz.R
config.status: creating src/config.h
=== configuring in jri (/tmp/RtmpCErgmn/R.INSTALL57e71df9a069/rJava/jri)
configure: running /bin/bash ./configure '--prefix=/usr/local'
--cache-file=/dev/null --srcdir=.
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking for gcc... gcc -std=gnu99
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -std=gnu99 -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking whether Java interpreter works... checking whether JNI programs
can be compiled... yes
checking whether JNI programs can be run... yes
checking JNI data types... ok
checking whether Rinterface.h exports R_CStackXXX variables... yes
checking whether Rinterface.h exports R_SignalHandlers... yes
configure: creating ./config.status
config.status: creating src/Makefile
config.status: creating Makefile
config.status: creating run
config.status: creating src/config.h
** libs
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I.
-I/usr/lib/jvm/java-7-openjdk-amd64/jre/../include     -fpic  -O2 -pipe -g
-c Rglue.c -o Rglue.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I.
-I/usr/lib/jvm/java-7-openjdk-amd64/jre/../include     -fpic  -O2 -pipe -g
-c arrayc.c -o arrayc.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I.
-I/usr/lib/jvm/java-7-openjdk-amd64/jre/../include     -fpic  -O2 -pipe -g
-c callJNI.c -o callJNI.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I.
-I/usr/lib/jvm/java-7-openjdk-amd64/jre/../include     -fpic  -O2 -pipe -g
-c callback.c -o callback.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I.
-I/usr/lib/jvm/java-7-openjdk-amd64/jre/../include     -fpic  -O2 -pipe -g
-c fields.c -o fields.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I.
-I/usr/lib/jvm/java-7-openjdk-amd64/jre/../include     -fpic  -O2 -pipe -g
-c init.c -o init.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I.
-I/usr/lib/jvm/java-7-openjdk-amd64/jre/../include     -fpic  -O2 -pipe -g
-c jri_glue.c -o jri_glue.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I.
-I/usr/lib/jvm/java-7-openjdk-amd64/jre/../include     -fpic  -O2 -pipe -g
-c loader.c -o loader.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I.
-I/usr/lib/jvm/java-7-openjdk-amd64/jre/../include     -fpic  -O2 -pipe -g
-c otables.c -o otables.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I.
-I/usr/lib/jvm/java-7-openjdk-amd64/jre/../include     -fpic  -O2 -pipe -g
-c rJava.c -o rJava.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I.
-I/usr/lib/jvm/java-7-openjdk-amd64/jre/../include     -fpic  -O2 -pipe -g
-c tools.c -o tools.o
gcc -std=gnu99 -shared -o rJava.so Rglue.o arrayc.o callJNI.o callback.o
fields.o init.o jri_glue.o loader.o otables.o rJava.o tools.o
-L/usr/lib/jvm/java-7-openjdk-amd64/jre/lib/amd64
-L/usr/lib/jvm/java-7-openjdk-amd64/jre/lib/amd64/server -ljvm
-L/usr/lib/R/lib -lR
(cd ../jri && make)
make[1]: se ingresa al directorio
«/tmp/RtmpCErgmn/R.INSTALL57e71df9a069/rJava/jri»
make -C src JRI.jar
make[2]: se ingresa al directorio
«/tmp/RtmpCErgmn/R.INSTALL57e71df9a069/rJava/jri/src»
/usr/bin/javac -target 1.4 -source 1.4 -d . ../Mutex.java ../RBool.java
../RConsoleOutputStream.java ../REXP.java ../RFactor.java ../RList.java
../RMainLoopCallbacks.java ../RVector.java ../Rengine.java
../package-info.java
warning: [options] bootstrap class path not set in conjunction with -source
1.4
1 warning
/usr/bin/javah -d . -classpath . org.rosuda.JRI.Rengine
gcc -std=gnu99 -c -o Rengine.o Rengine.c -g -Iinclude  -DRIF_HAS_CSTACK
-DRIF_HAS_RSIGHAND -O2 -pipe -g
-I/usr/lib/jvm/java-7-openjdk-amd64/jre/../include  -fpic
-I/usr/lib/jvm/java-7-openjdk-amd64/jre/../include -I/usr/share/R/include
-I/usr/share/R/include
gcc -std=gnu99 -c -o jri.o jri.c -g -Iinclude  -DRIF_HAS_CSTACK
-DRIF_HAS_RSIGHAND -O2 -pipe -g
-I/usr/lib/jvm/java-7-openjdk-amd64/jre/../include  -fpic
-I/usr/lib/jvm/java-7-openjdk-amd64/jre/../include -I/usr/share/R/include
-I/usr/share/R/include
gcc -std=gnu99 -c -o Rcallbacks.o Rcallbacks.c -g -Iinclude
-DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -O2 -pipe -g
-I/usr/lib/jvm/java-7-openjdk-amd64/jre/../include  -fpic
-I/usr/lib/jvm/java-7-openjdk-amd64/jre/../include -I/usr/share/R/include
-I/usr/share/R/include
gcc -std=gnu99 -c -o Rinit.o Rinit.c -g -Iinclude  -DRIF_HAS_CSTACK
-DRIF_HAS_RSIGHAND -O2 -pipe -g
-I/usr/lib/jvm/java-7-openjdk-amd64/jre/../include  -fpic
-I/usr/share/R/include -I/usr/share/R/include
gcc -std=gnu99 -c -o globals.o globals.c -g -Iinclude  -DRIF_HAS_CSTACK
-DRIF_HAS_RSIGHAND -O2 -pipe -g
-I/usr/lib/jvm/java-7-openjdk-amd64/jre/../include  -fpic
-I/usr/lib/jvm/java-7-openjdk-amd64/jre/../include
gcc -std=gnu99 -c -o rjava.o rjava.c -g -Iinclude  -DRIF_HAS_CSTACK
-DRIF_HAS_RSIGHAND -O2 -pipe -g
-I/usr/lib/jvm/java-7-openjdk-amd64/jre/../include  -fpic
-I/usr/lib/jvm/java-7-openjdk-amd64/jre/../include
rjava.c: En la función ‘RJava_init_ctrl’:
rjava.c:51:8: aviso: se descarta el valor de devolución de ‘write’, se
declaró con el atributo warn_unused_result [-Wunused-result]
rjava.c:52:7: aviso: se descarta el valor de devolución de ‘read’, se
declaró con el atributo warn_unused_result [-Wunused-result]
rjava.c: En la función ‘RJava_request_callback’:
rjava.c:39:8: aviso: se descarta el valor de devolución de ‘write’, se
declaró con el atributo warn_unused_result [-Wunused-result]
rjava.c: En la función ‘RJava_clear_lock’:
rjava.c:30:8: aviso: se descarta el valor de devolución de ‘write’, se
declaró con el atributo warn_unused_result [-Wunused-result]
rjava.c: En la función ‘RJava_request_lock’:
rjava.c:22:8: aviso: se descarta el valor de devolución de ‘write’, se
declaró con el atributo warn_unused_result [-Wunused-result]
gcc -std=gnu99 -o libjri.so Rengine.o jri.o Rcallbacks.o Rinit.o globals.o
rjava.o  -shared -L/usr/lib/jvm/java-7-openjdk-amd64/jre/lib/amd64
-L/usr/lib/jvm/java-7-openjdk-amd64/jre/lib/amd64/server -ljvm
-L/usr/lib/R/lib -lR
/usr/bin/javac -target 1.4 -source 1.4 -d . ../Mutex.java ../RBool.java
../RConsoleOutputStream.java ../REXP.java ../RFactor.java ../RList.java
../RMainLoopCallbacks.java ../RVector.java ../Rengine.java
../package-info.java
warning: [options] bootstrap class path not set in conjunction with -source
1.4
1 warning
/usr/bin/jar fc JRI.jar org libjri.so
make[2]: se sale del directorio
«/tmp/RtmpCErgmn/R.INSTALL57e71df9a069/rJava/jri/src»
rm -f libjri.so
cp src/libjri.so libjri.so
/usr/bin/javac -target 1.4 -source 1.4 -classpath src/JRI.jar -d examples
examples/rtest.java
warning: [options] bootstrap class path not set in conjunction with -source
1.4
Note: examples/rtest.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
1 warning
/usr/bin/javac -target 1.4 -source 1.4 -classpath src/JRI.jar -d examples
examples/rtest2.java
warning: [options] bootstrap class path not set in conjunction with -source
1.4
Note: examples/rtest2.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
1 warning
make[1]: se sale del directorio
«/tmp/RtmpCErgmn/R.INSTALL57e71df9a069/rJava/jri»
installing via 'install.libs.R' to
/home/hermesh/R/x86_64-pc-linux-gnu-library/2.15/rJava
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

* DONE (rJava)

The downloaded source packages are in
    ‘/tmp/RtmpRQzD0x/downloaded_packages’

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