That doesn't seem to be the case. After rebuilding using the old configure
options, I see

> Sys.getenv("TZDIR")
[1] ""

Jon


On 3 April 2014 14:39, peter dalgaard <pdalgd@gmail.com> wrote:

> Thanks to Brian. Yet another thing that zoomed by without me really
> noticing.
>
> However, I'd like to be sure that it isn't a "make dist" issue. We do seem
> to ship the correct files in src/extra/tzone, but could you please check
> Brian's suggestion about TZDIR possibly being set incorrectly?
>
> -pd
>
> On 03 Apr 2014, at 14:47 , Jon Clayden <jon.clayden@gmail.com> wrote:
>
> > Many thanks, Prof Ripley. The "--without-internal-tzcode" option does
> indeed resolve the problem.
> >
> > Regards,
> > Jon
> >
> >
> > On 3 April 2014 13:38, Prof Brian Ripley <ripley@stats.ox.ac.uk> wrote:
> > On 03/04/2014 13:27, peter dalgaard wrote:
> > I'm seeing nothing of the sort with the nightly build of 3.1.0RC, also
> on 10.9.2. This is a plain-vanilla Xcode+ancillaries build as per Simon's
> instructions (I think):
> >
> > pd$ more config.site
> > r_arch=${r_arch:=x86_64}
> > CC="gcc -arch $r_arch"
> > CXX="g++ -arch $r_arch"
> > F77="gfortran -arch $r_arch"
> > FC="gfortran -arch $r_arch"
> > OBJC="gcc -arch $r_arch"
> > with_blas="-framework vecLib"
> > with_lapack=yes
> >
> > so either something is up specifically with gcc-4.8, or you managed to
> hose your time zone data base somehow (/usr/share/zoneinfo, I suppose).
> >
> > More likely the one shipping with R, since --with-internal-tzcode is the
> default on OS X [*].  Setting TZDIR incorrectly would do this:
> >
> > > Sys.time()
> > [1] "2014-04-03 12:37:01 GMT"
> > Warning messages:
> > 1: In as.POSIXlt.POSIXct(x, tz) : unknown timezone 'Europe/London'
> > 2: In as.POSIXlt.POSIXct(x, tz) : unknown timezone 'GMT'
> > 3: In as.POSIXlt.POSIXct(x, tz) : unknown timezone 'America/New_York'
> >
> > when I do that.
> >
> > You could try --without-internal-tzcode.
> >
> > [*] Although x86_64 OS X has a 64-bit time_t it seems to have a 32-bit
> time-zone database and so wraps around.
> >
> >
> >
> > - Peter D.
> >
> > On 03 Apr 2014, at 13:24 , Jon Clayden <jon.clayden@gmail.com> wrote:
> >
> > For what it's worth, this issue persists in R-rc_2014-04-02_r65358.
> >
> > Regards,
> > Jon
> >
> >
> > On 24 March 2014 10:40, Jon Clayden <jon.clayden@gmail.com> wrote:
> >
> > Dear all,
> >
> > As of the current R alpha release, I'm seeing timezone-related warnings
> on
> > installing any package (including the recommended ones), which I haven't
> > seen before. For example,
> >
> > [~/Documents/Source/R-alpha]$ bin/R CMD INSTALL ~/git/tractor/lib/reportr
> > * installing to library '/Users/jon/Documents/Source/R-alpha/library'
> > * installing *source* package 'reportr' ...
> > Warning in as.POSIXlt.POSIXct(x, tz) : unknown timezone 'Europe/London'
> > Warning in as.POSIXlt.POSIXct(x, tz) : unknown timezone 'GMT'
> > Warning in as.POSIXlt.POSIXct(x, tz) :
> >   unknown timezone 'America/New_York'
> > Warning in as.POSIXlt.POSIXct(x, tz) : unknown timezone 'GMT'
> > Warning in as.POSIXlt.POSIXct(x, tz) :
> >   unknown timezone 'America/New_York'
> > ** R
> > ** preparing package for lazy loading
> > ** help
> > *** installing help indices
> > ** building package indices
> > ** testing if installed package can be loaded
> > * DONE (reportr)
> >
> > This is R-alpha r65266, built from source on OS X 10.9.2 using gcc 4.8.2.
> > I ran configure with
> >
> > ./configure --with-blas="-framework Accelerate" --with-lapack
> > --with-system-zlib --enable-memory-profiling
> > --with-tcl-config=/System/Library/Frameworks/Tcl.framework/tclConfig.sh
> > --with-tk-config=/System/Library/Frameworks/Tk.framework/tkConfig.sh
> > CC=gcc-4.8 CXX=g++-4.8 OBJC=clang F77=gfortran-4.8 FC=gfortran-4.8
> > CPPFLAGS="-D__ACCELERATE__" CFLAGS="-mtune=native -g -O2"
> > CXXFLAGS="-mtune=native -g -O2" FFLAGS="-mtune=native -g -O2"
> > FCFLAGS="-mtune=native -g -O2"
> >
> > Session info is
> >
> > R version 3.1.0 alpha (2014-03-23 r65266)
> > Platform: x86_64-apple-darwin13.1.0 (64-bit)
> >
> > locale:
> > [1] en_GB.UTF-8/en_GB.UTF-8/en_GB.UTF-8/C/en_GB.UTF-8/en_GB.UTF-8
> >
> > attached base packages:
> > [1] stats     graphics  grDevices utils     datasets  methods   base
> >
> > I see some related material in the NEWS, but no indication that these
> > warnings are expected. I hope this report is helpful.
> >
> > All the best,
> > Jon
> >
> >
> >
> >         [[alternative HTML version deleted]]
> >
> > ______________________________________________
> > R-devel@r-project.org mailing list
> > https://stat.ethz.ch/mailman/listinfo/r-devel
> >
> >
> >
> > --
> > Brian D. Ripley,                  ripley@stats.ox.ac.uk
> > Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
> > University of Oxford,             Tel:  +44 1865 272861 (self)
> > 1 South Parks Road,                     +44 1865 272866 (PA)
> > Oxford OX1 3TG, UK                Fax:  +44 1865 272595
> >
>
> --
> Peter Dalgaard, Professor
> Center for Statistics, Copenhagen Business School
> Solbjerg Plads 3, 2000 Frederiksberg, Denmark
> Phone: (+45)38153501
> Email: pd.mes@cbs.dk  Priv: PDalgd@gmail.com
>
>

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