After some trial and error I figured out how to pass matrices from R to java
and back
using rJava, but this method is not documented and I wonder if there is a
better way?

Anyway, here is what I found works:

(m = matrix(as.double(1:12),3,4))
[shows m as you would expect]

jtest <- .jnew("JTest")
(v <- .jcall(jtest, '[[D], 'myfunc', .jarray(m), evalArray=FALSE))
[shows v = m + 10]

Here the JTest class has a method named myfunc that accepts
a double[][] and returns a double[][]. It simply adds 10 to every
element.

The parameter 'evalArray' is confusing because when
evalArray=TRUE the result is NOT evaluated (a list is returned
that you then have to apply .jevalArray to do get the answer).

There seems to be an option to have a java reference returned
instead of the actual matrix. Can the R side manipulate the
matrix (on the java side) through this reference?

Thanks,
Dominick

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