Hi dear all

It's the first time for me to install a developmental version of R, I came
across following errors, my system is

DISTRIB_ID=Ubuntu
DISTRIB_RELEASE=10.04
DISTRIB_CODENAME=lucid
DISTRIB_DESCRIPTION="Ubuntu 10.04.1 LTS"

I downloaded the dev version of R in cran R source, and downloaded the
recommended packages by using wget as described in R manual, and run

./tools/link-recommended

 ./configure runs successfully

make give me following errors


##########################

begin installing recommended package cluster

* installing *source* package ‘cluster’ ...

** libs

make[3]: Entering directory `/tmp/Rtmpgxd64f/R.INSTALL33128ce7/cluster/src'

gcc -std=gnu99 -I/home/tengfei/R/x86_64-pc-linux-gnu-library/2.13/R-devel/include
 -I/usr/local/include    -fpic  -g -O2 -c clara.c -o clara.o

gfortran   -fpic  -g -O -c daisy.f -o daisy.o

gfortran   -fpic  -g -O -c dysta.f -o dysta.o

gcc -std=gnu99 -I/home/tengfei/R/x86_64-pc-linux-gnu-library/2.13/R-devel/include
 -I/usr/local/include    -fpic  -g -O2 -c fanny.c -o fanny.o

gcc -std=gnu99 -I/home/tengfei/R/x86_64-pc-linux-gnu-library/2.13/R-devel/include
 -I/usr/local/include    -fpic  -g -O2 -c init.c -o init.o

gfortran   -fpic  -g -O -c meet.f -o meet.o

gfortran   -fpic  -g -O -c mona.f -o mona.o

gcc -std=gnu99 -I/home/tengfei/R/x86_64-pc-linux-gnu-library/2.13/R-devel/include
 -I/usr/local/include    -fpic  -g -O2 -c pam.c -o pam.o

gcc -std=gnu99 -I/home/tengfei/R/x86_64-pc-linux-gnu-library/2.13/R-devel/include
 -I/usr/local/include    -fpic  -g -O2 -c sildist.c -o sildist.o

gcc -std=gnu99 -I/home/tengfei/R/x86_64-pc-linux-gnu-library/2.13/R-devel/include
 -I/usr/local/include    -fpic  -g -O2 -c spannel.c -o spannel.o

gfortran   -fpic  -g -O -c twins.f -o twins.o

gcc -std=gnu99 -shared -L/usr/local/lib64 -o cluster.so clara.o
daisy.o dysta.o fanny.o init.o meet.o mona.o pam.o sildist.o spannel.o
twins.o -lgfortran -lm

make[3]: Leaving directory `/tmp/Rtmpgxd64f/R.INSTALL33128ce7/cluster/src'

installing to /home/tengfei/R/x86_64-pc-linux-gnu-library/2.13/R-devel/library/cluster/libs

** R

Warning in parse(outFile) :

  invalid input found on input connection
'/home/tengfei/R/x86_64-pc-linux-gnu-library/2.13/R-devel/library/cluster/R/cluster'

** data

**  moving datasets to lazyload DB

** inst

** preparing package for lazy loading

Warning in parse(n = -1, file = file) :

  invalid input found on input connection
'/home/tengfei/R/x86_64-pc-linux-gnu-library/2.13/R-devel/library/cluster/R/cluster'

** help

Warning in readLines(file, warn = FALSE) :

  invalid input found on input connection
'/tmp/Rtmpgxd64f/R.INSTALL33128ce7/cluster/man/plantTraits.Rd'

Warning: /tmp/Rtmpgxd64f/R.INSTALL33128ce7/cluster/man/plantTraits.Rd:69:
unexpected END_OF_INPUT 'Structuration de communaut

'

*** installing help indices

** building package indices ...

** testing if installed package can be loaded

Warning: S3 methods ‘clusplot.default’, ‘clusplot.partition’,
‘pltree.twins’, ‘silhouette.default’, ‘silhouette.clara’,
‘silhouette.partition’, ‘plot.agnes’, ‘plot.diana’, ‘plot.mona’,
‘plot.partition’, ‘plot.silhouette’, ‘print.mona’, ‘print.pam’,
‘print.summary.mona’, ‘print.summary.pam’, ‘print.summary.silhouette’,
‘summary.mona’, ‘summary.pam’, ‘summary.silhouette’ were declared in
NAMESPACE but not found

Error in namespaceExport(ns, exports) :

  undefined exports: clusplot, pltree, silhouette, mona, pam,
bannerplot, lower.to.upper.tri.inds, upper.to.lower.tri.inds,
meanabsdev, sizeDiss, sortSilhouette

ERROR: loading failed

* removing ‘/home/tengfei/R/x86_64-pc-linux-gnu-library/2.13/R-devel/library/cluster’

make[2]: *** [cluster.ts] Error 1

make[2]: Leaving directory
`/home/tengfei/R/x86_64-pc-linux-gnu-library/2.13/R-devel/src/library/Recommended'

make[1]: *** [recommended-packages] Error 2

make[1]: Leaving directory
`/home/tengfei/R/x86_64-pc-linux-gnu-library/2.13/R-devel/src/library/Recommended'

make: *** [stamp-recommended] Error 2


#############

I don't know if I miss sth important or did anything wrong,  sorry to
bother you guys.


Tengfei




-- 
Tengfei Yin
MCDB PhD student
1620 Howe Hall, 2274,
Iowa State University
Ames, IA,50011-2274

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