
-----Original Message-----
From: Robert Gentleman [mailto:rgentlem@fhcrc.org]
Sent: Wed 10/12/2008 18:47
To: Legaie, Roxane
Subject: Re: Kegg.db with GOstats
 
Hi Roxanne,
  Can you redirect your question to the mailing list. And, you can find the
answer in the mailing list archives...

  best wishes
    Robert


Legaie, Roxane wrote:
> Dear Robert Gentleman,
> I am currently working on Streptomyces coelicolor microarray data.
> 
> I have some clusters of genes and I would like to annotate them, but as you may know, this organism is not yet annotated with Gene Ontologies. There is no database (such as at "ath1121501.db" for Arabidopsis thaliana) available to use with the GOstats package.
> 
> So, I would like to use at least the Kegg.db package with GOstats.
> Can you tell me how to include KEGG.db ? I can't find anything about it.
> 
> Thank you very much.
> Roxane LEGAIE.
> 
> 
> 
> 
> Roxane LEGAIE
> Bioinformatician
> --
> Warwick Systems Biology Centre
> Coventry House
> University of Warwick
> Coventry CV4 7AL
> U.K.
> +44 (0)24 761 50332
> R.Legaie@warwick.ac.uk
> http://www2.warwick.ac.uk/fac/sci/systemsbiology/
> 
> 

-- 
Robert Gentleman, PhD
Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M2-B876
PO Box 19024
Seattle, Washington 98109-1024
206-667-7700
rgentlem@fhcrc.org


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