Dirk,

At the moment, our emphasis is getting an installation that will run Rmpi in
batch mode. I imagine my sysadmin put that line in to minimize potential
problems. To be honest, I didn't catch it, I was just glad to get a compile
:)

As to the line that doesn't apply to the R install, I think you are
referring to the "with mpi", which I think he also slipped in not realizing
it should more properly go with the Rmpi install.

Mark

On Tue, Jun 3, 2008 at 12:18 AM, Dirk Eddelbuettel <edd@debian.org> wrote:

> On Mon, Jun 02, 2008 at 11:56:16PM -0400, Mark Kimpel wrote:
> > ../configure --prefix=/N/u/mkimpel/R_HOME/R-patched/R-build \
> > --with-system-zlib=/usr/lib64 --with-system-bzlib=/usr/lib64 \
> > --with-mpi=/N/soft/linux-rhel4-x86_64/openmpi/1.2.5/intel-64 --with-tcltk
> \
>
> There is no such option for R's configure.
>
> > --with-tcl-config=/N/soft/linux-rhel4-x86_64/tcl8.4.16/lib64/tclConfig.sh
> \
> > --with-tk-config=/N/soft/linux-rhel4-x86_64/tk8.4.16/lib64/tkConfig.sh \
> > --without-x --without-readline --without-iconv \
>
> So you never want your compute cluster to be able to do an interactive
> plot under x11 ?
>
> Dirk
>
> --
> Three out of two people have difficulties with fractions.
>



-- 
Mark W. Kimpel MD  ** Neuroinformatics ** Dept. of Psychiatry
Indiana University School of Medicine

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