[Rd] FR: valid_regex() to test string validity as a regular expression
Michael Chirico
ch|r|com @end|ng |rom goog|e@com
Thu Oct 12 06:27:14 CEST 2023
Great to know this exists in package space!
Of course, using re2 validation for a regex to be executed with TRE
(via grep*) is just begging for trouble (e.g. [1] suggests re2 is
closer to PCRE, [2] says "mostly" PCRE compatible). And overhauling
everything to use re2 just for regex validation is hardly practical.
[1] https://laurikari.net/tre/google-releases-the-re2-library/
[2] https://hackerboss.com/is-your-regex-matcher-up-to-snuff/
On Wed, Oct 11, 2023 at 4:02 PM Toby Hocking <tdhock5 using gmail.com> wrote:
>
> Hi Michael, it sounds like you don't want to use a CRAN package for
> this, but you may try re2, see below.
>
> > grepl("(invalid","subject",perl=TRUE)
> Error in grepl("(invalid", "subject", perl = TRUE) :
> invalid regular expression '(invalid'
> In addition: Warning message:
> In grepl("(invalid", "subject", perl = TRUE) :
> PCRE pattern compilation error
> 'missing closing parenthesis'
> at ''
>
> > grepl("(invalid","subject",perl=FALSE)
> Error in grepl("(invalid", "subject", perl = FALSE) :
> invalid regular expression '(invalid', reason 'Missing ')''
> In addition: Warning message:
> In grepl("(invalid", "subject", perl = FALSE) :
> TRE pattern compilation error 'Missing ')''
>
> > re2::re2_regexp("(invalid")
> Error: missing ): (invalid
>
> On Tue, Oct 10, 2023 at 7:57 AM Michael Chirico via R-devel
> <r-devel using r-project.org> wrote:
> >
> > > Grepping an empty string might work in many cases...
> >
> > That's precisely why a base R offering is important, as a surer way of
> > validating in all cases. To be clear I am trying to directly access the
> > results of tre_regcomp().
> >
> > > it is probably more portable to simply be prepared to propagate such
> > errors from the actual use on real inputs
> >
> > That works best in self-contained calls -- foo(re) and we execute re inside
> > foo().
> >
> > But the specific context where I found myself looking for a regex validator
> > is more complicated (https://github.com/r-lib/lintr/pull/2225). User
> > supplies a regular expression in a configuration file, only "later" is it
> > actually supplied to grepl().
> >
> > Till now, we've done your suggestion -- just surface the regex error at run
> > time. But our goal is to make it friendlier and fail earlier at "compile
> > time" as the config is loaded, "long" before any regex is actually executed.
> >
> > At a bare minimum this is a good place to return a classed warning (say
> > invalid_regex_warning) to allow finer control than tryCatch(condition=).
> >
> > On Mon, Oct 9, 2023, 11:30 PM Tomas Kalibera <tomas.kalibera using gmail.com>
> > wrote:
> >
> > >
> > > On 10/10/23 01:57, Michael Chirico via R-devel wrote:
> > >
> > > It will be useful to package authors trying to validate input which is
> > > supposed to be a valid regular expression.
> > >
> > > As near as I can tell, the only way we can do so now is to run any
> > > regex function and check for the warning and/or condition to bubble
> > > up:
> > >
> > > valid_regex <- function(str) {
> > > stopifnot(is.character(str), length(str) == 1L)
> > > !inherits(tryCatch(grepl(str, ""), condition = identity), "condition")
> > > }
> > >
> > > That's pretty hefty/inscrutable for such a simple validation. I see a
> > > variety of similar approaches in CRAN packages [1], all slightly
> > > different. It would be good for R to expose a "canonical" way to run
> > > this validation.
> > >
> > > At root, the problem is that R does not expose the regex compilation
> > > routines like 'tre_regcomp', so from the R side we have to resort to
> > > hacky approaches.
> > >
> > > Hi Michael,
> > >
> > > I don't think you need compilation functions for that. If a regular
> > > expression is found invalid by a specific third party library R uses, the
> > > library should return and error to R and R should return an error to you,
> > > and you should probably propagate that to your users. Grepping an empty
> > > string might work in many cases as a test, but it is probably more portable
> > > to simply be prepared to propagate such errors from the actual use on real
> > > inputs. In theory, there could be some optimization for a particular case,
> > > the checking may not be the same - but that is the same say for compilation
> > > and checking.
> > >
> > > Things get slightly complicated by encoding/useBytes modes
> > > (tre_regwcomp, tre_regncomp, tre_regwncomp, tre_regcompb,
> > > tre_regncompb; all in tre.h), but all are already present in other
> > > regex routines, so this is doable.
> > >
> > > Re encodings, simply R strings should be valid in their encoding. This is
> > > not just for regular expressions but also for anything else. You shouldn't
> > > assume that R can handle invalid strings in any reasonable way. Definitely
> > > you shouldn't try adding invalid strings in tests - behavior with invalid
> > > strings is unspecified. To test whether a string is valid, there is
> > > validEnc() (or validUTF8()). But, again, it is probably safest to propagate
> > > errors from the regular expression R functions (in case the checks differ,
> > > particularly for non-UTF-8), also, duplicating the encoding checks can be a
> > > non-trivial overhead.
> > >
> > > If there was a strong need to have an automated way to somehow classify
> > > specifically errors from the regex libraries, perhaps R could attach some
> > > classes to them when the library tells.
> > >
> > > Tomas
> > >
> > > Exposing a function to compile regular expressions is common in other
> > > languages, e.g. Go [2], Python [3], JavaScript [4].
> > >
> > > [1] https://github.com/search?q=lang%3AR+%2Fis%5Ba-zA-Z0-9._%5D*reg%5Ba-zA-Z0-9._%5D*ex.*%28%3C-%7C%3D%29%5Cs*function%2F+org%3Acran&type=code
> > > [2] https://pkg.go.dev/regexp#Compile
> > > [3] https://docs.python.org/3/library/re.html#re.compile
> > > [4] https://developer.mozilla.org/en-US/docs/Web/JavaScript/Reference/Global_Objects/RegExp
> > >
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> > >
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