[Rd] Installation of R-4.3.1 with intel 2022

[Giuseppe Calò]

Hi all,
I have the issue:

icc -std=c99 -std=gnu11 -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O3 -wd188 -ip -mp  -c eval.c -o eval.o
arithmetic.c(66): warning #274: declaration is not visible outside of function
  int matherr(struct exception *exc)
                     ^

arithmetic.c(68): error: pointer to incomplete class type is not allowed
      switch (exc->type) {
              ^

arithmetic.c(69): error: identifier "DOMAIN" is undefined
      case DOMAIN:
           ^

arithmetic.c(70): error: identifier "SING" is undefined
      case SING:
           ^

arithmetic.c(73): error: identifier "OVERFLOW" is undefined
      case OVERFLOW:
           ^

arithmetic.c(76): error: identifier "UNDERFLOW" is undefined
      case UNDERFLOW:
           ^

arithmetic.c(77): error: pointer to incomplete class type is not allowed
  	exc->retval = 0.0;

icc -std=c99 -std=gnu11 -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O3 -wd188 -ip -mp  -c flexiblas.c -o flexiblas.o
icc: command line remark #10148: option '-mp' not supported
compilation aborted for arithmetic.c (code 2)
make[3]: *** [../../Makeconf:129: arithmetic.o] Error 2
make[3]: *** Waiting for unfinished jobs....
icc: command line remark #10148: option '-mp' not supported
make[3]: Leaving directory '/opt/sources/R/R-4.3.1-intel21/src/main'
make[2]: *** [Makefile:140: R] Error 2
make[2]: Leaving directory '/opt/sources/R/R-4.3.1-intel21/src/main'
make[1]: *** [Makefile:28: R] Error 1
make[1]: Leaving directory '/opt/sources/R/R-4.3.1-intel21/src'
make: *** [Makefile:62: R] Error 1

with oneapi-2022.1.0/compiler-rt/2022.1.0; oneapi-2022.1.0/mkl/2022.1.0 while building R-4.3.1 on redhat 8.4 glibc2.28-189

I followed a workaround proposed:
https://community.intel.com/t5/Intel-C-Compiler/Error-when-compiling-R-from-source-code-ubuntu-18-04/m-p/1176401/thread-id/36575 <https://community.intel.com/t5/Intel-C-Compiler/Error-when-compiling-R-from-source-code-ubuntu-18-04/m-p/1176401/thread-id/36575>

Deactivate  HAVE_MATHERR macro in src/include/config.h

Using this workaroud I get R with:

BLAS/LAPACK: /opt/intel/oneapi_2022.2.0/mkl/2022.1.0/lib/intel64/libmkl_intel_lp64.so.2;  LAPACK version 3.9.0

is correct?

Is these a way to avoid arithmetic issue?

My configure is:

module load intel-2021.6.0/2021.6.0 oneapi-2022.1.0/mkl
MKL="-L${MKLROOT}/lib/intel64 -lmkl_gf_lp64 -lmkl_core -lmkl_gnu_thread -dl -fopenmp"
export CC="icc -std=c99"
export CFLAGS="-g -O3 -wd188 -ip -mp"
export FC=ifort
export FLAGS="-g -O3 -mp"
export CXX=icpc
export CXXFLAGS="-g -O3 -mp"
SHLIB_CXXLD=icpc
export MKL_INTERFACE_LAYER=GNU,LP64 
export MKL_THREADING_LAYER=GNU
./configure --prefix=/opt/intel-2021.6.0/R/4.3.1 --with-blas="$MKL" --with-lapack  --enable-memory-profiling --enable-BLAS-shlib --enable-R-shlib --enable-R-static-lib --with-pcre2

Thanks a lot,
Giuseppe.

———————————————————————————————————————
Giuseppe Calò

Fondazione CMCC
Centro Euro-Mediterraneo sui Cambiamenti Climatici presso Complesso Ecotekne 
Università del Salento - Strada Prov.le Lecce - Monteroni 73100 Lecce  IT
http://www.cmcc.it <http://www.cmcc.it/>
https://goo.gl/maps/wtahPDbNVen

mobile: (+39) 3208190020
email: giuseppe.calo using cmcc.it

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