[Rd] Testing R build when using --without-recommended-packages?

Henrik Bengtsson henr|k@bengt@@on @end|ng |rom gm@||@com
Wed May 5 21:27:48 CEST 2021


On Wed, May 5, 2021 at 2:13 AM Martin Maechler
<maechler using stat.math.ethz.ch> wrote:
>
> >>>>> Gabriel Becker
> >>>>>     on Tue, 4 May 2021 14:40:22 -0700 writes:
>
>     > Hmm, that's fair enough Ben, I stand corrected.  I will say that this seems
>     > to be a pretty "soft" recommendation, as these things go, given that it
>     > isn't tested for by R CMD check, including with the -as-cran extensions. In
>     > principle, it seems like it could be, similar checks are made in package
>     > code for inappropriate external-package-symbol usage/
>
>     > Either way, though, I suppose I have a number of packages which have been
>     > invisibly non-best-practices compliant for their entire lifetimes (or at
>     > least, the portion of that where they had tests/vignettes...).
>
>     > Best,
>     > ~G
>
>     > On Tue, May 4, 2021 at 2:22 PM Ben Bolker <bbolker using gmail.com> wrote:
>
>     >> Sorry if this has been pointed out already, but some relevant text
>     >> from
>     >>
>     >> https://cran.r-project.org/doc/manuals/r-release/R-exts.html#Suggested-packages
>     >>
>     >> > Note that someone wanting to run the examples/tests/vignettes may not
>     >> have a suggested package available (and it may not even be possible to
>     >> install it for that platform). The recommendation used to be to make
>     >> their use conditional via if(require("pkgname")): this is OK if that
>     >> conditioning is done in examples/tests/vignettes, although using
>     >> if(requireNamespace("pkgname")) is preferred, if possible.
>     >>
>     >> ...
>     >>
>     >> > Some people have assumed that a ‘recommended’ package in ‘Suggests’
>     >> can safely be used unconditionally, but this is not so. (R can be
>     >> installed without recommended packages, and which packages are
>     >> ‘recommended’ may change.)
>
>
> Thank you all (Henrik, Gabe, Dirk & Ben) !
>
> I think it would be a good community effort  and worth the time
> also of R core to further move into the right direction
> as Dirk suggested.
>
> I think we all agree it would be nice if Henrik (and anybody)
> could use  'make check' on R's own sources after using
>  --without-recommended-packages
>
> Even one more piece of evidence is the   tests/README   file in
> the R sources.  It has much more but simply starts with
>
> ---------------------------------------------------------------------------
> There is a hierarchy of check targets:
>
>      make check
>
> for all builders.  If this works one can be reasonably happy R is working
> and do `make install' (or the equivalent).
>
>     make check-devel
>
> for people changing the code: this runs things like the demos and
> no-segfault which might be broken by code changes, and checks on the
> documentation (effectively R CMD check on each of the base packages).
> This needs recommended packages installed.
>
>     make check-all
>
> runs all the checks, those in check-devel plus tests of the recommended
> packages.
>
> Note that for complete testing you will need a number of other
> ......................
> ......................
>
> ---------------------------------------------------------------------------
>
> So, our (R core) own intent has been that   'make check'  should
> run w/o rec.packages  but further checking not.
>
> So, yes, please, you are encouraged to send patches against the
> R devel trunk  to fix such examples and tests.

Thanks Martin!  Thanks for confirming and for being open to patches.
This encourages me to try to patch what we've got so that 'make check'
and 'make check-devel' can complete also without 'recommended'
packages.

/Henrik

>
> Best,
> Martin
>
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