[Rd] survival bug? - solved
Therneau, Terry M., Ph.D.
therne@u @end|ng |rom m@yo@edu
Thu Mar 5 17:39:08 CET 2020
I ended up finding the issue by a focused code review.
Once in the past, I had a version that would fail under one architecture but not another,
in that case some help from Brian Ripley pointed me to the offending line of C code.
That line read, but did not write, at an invalid memory location. Starting with the
question of "what C routines have I added or modified most recently" along with where the
fault appeared to occur in my test suite, I started reading C code and found one.
Revised code passes tests on the winbuilder site.
For the curious, I had a line asking "is this patient id different than the last patient
id" in the C routine underneath survcheck(); I'm making sure that patients don't go
backwards in time. Essentially
for (i=0; i< n; i) {
if (id[i] != id[i-1] ) { ...}
It is still a surprise to me that just LOOKING at this out of range element would cause a
failure, [i-1] never appears on the left hand side of any expressions in the ... chunk
above. Nevertheless, it was an error. Que sera sera
A strong thanks to those who gave solid suggestions for bringing up a local copy of Windows.
Terry T
>>> My latest submission of survival3.1-10 to CRAN fails a check, but only on
>>> windows, which
>>> I don't use.
>>> How do I track this down?
>>> The test in question works fine on my Linux box.
>>>
>>> Terry
>>>
>>>
>>>
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>>>
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