[Rd] Compilation error for R 4.0.2

[Wim R. Cardoen]

Dear Kurt,

Your suggestion worked.

Thank you,
Wim


On Sat, Jul 11, 2020 at 4:47 AM Kurt Hornik <Kurt.Hornik using wu.ac.at> wrote:

> >>>>> Wim R Cardoen writes:
>
> > Hello,
> > I experienced a compiler error when I tried to compile the latest version
> > of R i.e. R4.0.2
> > making iosupport.d from iosupport.c
> > making lapack.d from lapack.c
> > making list.d from list.c
> > making localecharset.d from localecharset.c
> > grep.c(74): catastrophic error: cannot open source file "pcre2.h"
> >   # include<pcre2.h>
> > (The pcre2.h header file is actually present!)
>
>
> > I used the following compiler flags:
> > # PCRE2:
> > # -----
> > setenv CC gcc
> > setenv CFLAGS " -O2 -fPIC "
> > ./configure --prefix=/uufs/chpc.utah.edu/sys/installdir/pcre2/10.35 \
> >             --enable-pcre2-16 --enable-pcre2-32 --with-pic
>
> > module purge
> > module load intel/2019.5.281
>
> > # USe a modern version of curl & pcre2 (The current one on Centos 7 is
> TOO
> > old)
> > setenv CURLDIR "/uufs/chpc.utah.edu/sys/installdir/curl/7.65.3"
> > setenv PCRE2DIR "/uufs/chpc.utah.edu/sys/installdir/pcre2/10.35"
>
> > setenv PATH ${PCRE2DIR}/bin:$PATH
>
> >  Setting Compiler & linker flags:
> > setenv CC icc
> > setenv CXX icpc
> > setenv F77 ifort
> > setenv FC ifort
> > setenv CFLAGS   " -axCORE-AVX512,CORE-AVX2,AVX,SSE4.2 -O3 -qopenmp
> > -fp-model precise -fPIC -I${MKLROOT}/include -I${CURLDIR}/include
> >                   -I${PCRE2DIR}/include "
>
> What I guess you should do is
>
>  /path/to/configure CPPFLAGS="-I${PCRE2DIR}/include ......"
>  make
>
> Hth
> -k
>
>
> > setenv CXXFLAGS " ${CFLAGS} "
> > setenv FFLAGS   " ${CFLAGS} "
> > setenv FCFLAGS  " ${CFLAGS} "
> > setenv LDFLAGS  " -Wl,-rpath=${MKLROOT}/lib/intel64_lin
> > -L${MKLROOT}/lib/intel64_lin -lmkl_intel_lp64 -lmkl_intel_thread
> -lmkl_core
> >                   -Wl,-rpath=/uufs/
> >
> chpc.utah.edu/sys/installdir/intel/compilers_and_libraries_2019.5.281/linux/compiler/lib/intel64_lin
> >                            -L/uufs/
> >
> chpc.utah.edu/sys/installdir/intel/compilers_and_libraries_2019.5.281/linux/compiler/lib/intel64_lin
> >                            -liomp5 -lpthread -ldl
> -Wl,-rpath=${CURLDIR}/lib
> > -L${CURLDIR}/lib -lcurl
> >                            -Wl,-rpath=${PCRE2DIR}/lib -L${PCRE2DIR}/lib
> >  -lpcre2-8 -lpcre2-posix "
>
> > ./configure --prefix=/uufs/chpc.utah.edu/sys/installdir/R/4.0.2i
> > --enable-R-profiling --enable-R-shlib --enable-memory-profiling
> > --enable-java --enable-shared=yes --with-blas="$LDFLAGS" --with-readline
> > --with-cairo --with-tcltk --with-libpng --with-jpeglib --with-libtiff
> > --with-ICU --with-pic --with-x --with-lapack --with-pcre2
>
> > I also appended the corresponding config.log:
>
> > Thank you,
>
> > Wim
> > ______________________________________________
> > R-devel using r-project.org mailing list
> > https://stat.ethz.ch/mailman/listinfo/r-devel
>

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