[Rd] Bug Report: read.table with UTF-8 encoded file imports infinity symbol as Integer 8
Tomas Kalibera
tom@@@k@||ber@ @end|ng |rom gm@||@com
Fri Feb 8 13:07:11 CET 2019
I can reproduce this behavior on my Windows 10 system in RGui (cp1252):
when I paste the Unicode infinity symbol into the console, it is treated
as number 8. This is caused by Windows "best fit" default behavior in
conversion of unicode characters to characters in the current native
encoding: at some point in the past, 8 has been chosen as a good fit for
infinity in Windows. In my scenario, the conversion is invoked by RGui
before returning the input to the main R loop, even before the input
gets to the parser. In principle, we could change this particular
conversion in RGui to avoid the substitution. RGui uses "\uxxxx" escapes
to pass characters that cannot be represented, this is why e.g. the
Cyrillic Zhe \u0436 worked, so we could tell Windows not to do the
substitution and pass "\u221e" for Infinity, and then the string after
being processed by the parser will be represented in UTF-8 inside R and
could be e.g. printed by the RGui console. That is something that could
be considered, but it will not solve the main problem and it may
actually cause trouble to users who are used to such substitutions
(especially when the substitutions are more intuitive, but, that may be
a matter of opinion).
The main problem is that in normal use, sooner or later R will get to
the point when it will need to do the conversion to native encoding, and
in some context where "\uxxxx" escapes will not be possible. One cannot
reliably work with strings in R that cannot be represented in the
current native encoding (except when one knows precisely how to avoid
the conversion in some specific task, but that may be brittle; so the
best-fit substitution might in principle help here). This problem does
not exist on Unix/macOS systems where the current native encoding is
UTF-8 these days, so today it only exists on Windows where UTF-8 cannot
be the current native encoding. As has been discussed before, even
though we could rewrite in principle all calls to Windows API to use
Unicode and have all strings in UTF-8 in R, we would still have problems
when interfacing with packages that assume strings are in current native
encoding (without checking), so this problem won't be easy to fix.
Best,
Tomas
On 2/7/19 3:10 PM, Daniel Possenriede wrote:
> There seems to be something odd with "∞" on Windows (and not only with
> read.table)
> In native encoding (cp-1252 in my case), "∞" gets converted to "8"
>
> x <- "∞"
> Encoding(x)
> #> [1] "unknown"
> print(x)
> #> [1] "8"
> charToRaw(x)
> #> [1] 38
>
> "∞" is indeed "8"
>
> identical(x, "8")
> #> [1] TRUE
>
> Everything seems fine if "∞" is UTF-8 encoded.
>
> y <- "\u221E"
> Encoding(y)
> #> [1] "UTF-8"
> print(y)
> #> [1] "∞"
> charToRaw(y)
> #> [1] e2 88 9e
>
> Unless the string is converted back to native encoding.
>
> format(y)
> #> [1] "8"
>
> This ought to be "<U+221E>", equivalently to
>
> format("∝")
> #> [1] "<U+221D>"
>
> Session Info:
>
> si <- sessionInfo()
> si$running
> #> [1] "Windows 10 x64 (build 17134)"
> si$R.version$version.string
> #> [1] "R version 3.5.2 (2018-12-20)"
> si$locale
> #> [1]
> "LC_COLLATE=German_Germany.1252;LC_CTYPE=German_Germany.1252;LC_MONETARY=German_Germany.1252;LC_NUMERIC=C;LC_TIME=German_Germany.1252"
>
>
>
> Am Do., 7. Feb. 2019 um 14:33 Uhr schrieb David Byrne <
> david.byrne222 using gmail.com>:
>
>> I can confirm that it doesn't happen on Ubuntu 18.04.1 so Peter is
>> most likely correct; it looks like its Windows specific.
>>
>> On Thu, 7 Feb 2019 at 12:55, peter dalgaard <pdalgd using gmail.com> wrote:
>>> This doesn't seem to be happening on MacOS, neither in Terminal nor
>> RStudio, (R 3.5.1, R-devel, R-patched). So probably Windows specific.
>>> -pd
>>>
>>>> On 7 Feb 2019, at 11:17 , David Byrne <david.byrne222 using gmail.com>
>> wrote:
>>>> Bug
>>>> Using read.table(file, encoding="UTF-8") to import a UTF-8 encoded
>>>> file containing the infinity symbol (' ∞ ') results in the infinity
>>>> symbol imported as the number 8. Other Unicode characters seem
>>>> unaffected, example, Zhe: ж
>>>>
>>>> Expected Behavior:
>>>> The imported data.frame should represent the infinity symbol as the
>>>> expected 'Inf' so that normal mathematical operations can be processed
>>>>
>>>> Stack Overflow Post:
>>>> I created a question on Stack Overflow where one other member was able
>>>> to reproduce the same issues I was having. This question can be found
>>>> at:
>>>>
>> https://stackoverflow.com/questions/54522196/r-read-table-with-utf-8-encoded-file-reads-infinity-symbol-as-8-int
>>>> Method to Reproduce - 1:
>>>> A simple method to reproduce this issues is to use R-Studio: In the
>>>> console, type the following:
>>>>> read.table(text=" ∞", encoding="UTF-8")
>>>> The result should be a data.frame with a single value of '8'
>>>>
>>>> Repeating the same with ж Results in correct expected behavior
>>>>
>>>> Method to Reproduce - 2:
>>>> Create a .csv file containing the infinity and Zhe characters (I have
>>>> attached the file for convenience, hopefully it is no rejected by your
>>>> email service). Launch an interactive session using
>>>>
>>>>> r --vanilla
>>>> Enter the following statement taking care to replace the
>>>> <path-to-file> with the appropriate one:
>>>>
>>>>> read.table("<path-to-file>/unicode_chars.csv", sep=",",
>> encoding="UTF-8")
>>>>
>>>> This should result in a two element data.frame; the first being the
>>>> incorrect value of 8 with an additional <U+FEFF> and the second the
>>>> correct value of Zhe.
>>>>
>>>> Note the additional <U+FEFF> prefixed to the front of the '8'. This
>>>> appears to be a hidden character for the purposes of letting editors
>>>> know the encoding. The following link has some explanation however, it
>>>> states this is caused by excel. The file I created was done so using
>>>> notepad and not Excel.
>>>>
>>>>
>> https://medium.freecodecamp.org/a-quick-tale-about-feff-the-invisible-character-cd25cd4630e7
>>>> System Details:
>>>> OS:
>>>>> Windows 10.0.17134 Build 17134
>>>>
>>>> R Version:
>>>>> platform x86_64-w64-mingw32
>>>>> arch x86_64
>>>>> os mingw32
>>>>> system x86_64, mingw32
>>>>> status
>>>>> major 3
>>>>> minor 4.1
>>>>> year 2017
>>>>> month 06
>>>>> day 30
>>>>> svn rev 72865
>>>>> language R
>>>>> version.string R version 3.4.1 (2017-06-30)
>>>>> nickname Single Candle
>>>> ______________________________________________
>>>> R-devel using r-project.org mailing list
>>>> https://stat.ethz.ch/mailman/listinfo/r-devel
>>> --
>>> Peter Dalgaard, Professor,
>>> Center for Statistics, Copenhagen Business School
>>> Solbjerg Plads 3, 2000 Frederiksberg, Denmark
>>> Phone: (+45)38153501
>>> Office: A 4.23
>>> Email: pd.mes using cbs.dk Priv: PDalgd using gmail.com
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>>
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