[Rd] failure of make check-all
peter dalgaard
pdalgd at gmail.com
Thu Apr 6 14:52:23 CEST 2017
You may want to retry that after a make distclean, in case anything changed in the toolchain.
-pd
> On 6 Apr 2017, at 14:43 , Therneau, Terry M., Ph.D. <therneau at mayo.edu> wrote:
>
> This run was done this AM on my linux box, and older 32 bit Dell optiplex (core 2 duo). The failure message is at the very end. (It's due to be replaced in a couple of weeks.) The sequence of steps was
>
> svn up
> tools/rsync-recommended
> ./configure
> make
> make check-all |& tee zzz
>
>
> Terry T.
>
>
> Result of ./config
> R is now configured for i686-pc-linux-gnu
>
> Source directory: .
> Installation directory: /usr/local
>
> C compiler: gcc -g -O2
> Fortran 77 compiler: f95 -g -O2
>
> Default C++ compiler: g++
> C++98 compiler: g++
> C++11 compiler: g++ -std=gnu++11
> C++14 compiler: g++ -std=gnu++14
> C++17 compiler:
> Fortran 90/95 compiler: gfortran -g -O2
> Obj-C compiler:
>
> Interfaces supported: X11, tcltk
> External libraries: readline, curl
> Additional capabilities: PNG, JPEG, NLS, cairo, ICU
> Options enabled: shared BLAS, R profiling
>
> Capabilities skipped: TIFF
> Options not enabled: memory profiling
>
> Recommended packages: yes
>
> ----
> sessionInfo() after invoking R --vanilla
>
> R Under development (unstable) (2017-04-06 r72489)
> Platform: i686-pc-linux-gnu (32-bit)
> Running under: Ubuntu 16.04.2 LTS
>
> Matrix products: default
> BLAS: /usr/local/src/R-devel/lib/libRblas.so
> LAPACK: /usr/local/src/R-devel/lib/libRlapack.so
>
> locale:
> [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
> [3] LC_TIME=en_US.UTF-8 LC_COLLATE=C
> [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
> [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
> [9] LC_ADDRESS=C LC_TELEPHONE=C
> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
>
> attached base packages:
> [1] stats graphics grDevices utils datasets methods base
>
> loaded via a namespace (and not attached):
> [1] compiler_3.5.0
>
> ----------------------
> The results of "make" showed nothing remarkable.
>
> Here is make test-all
>
> make[1]: Entering directory '/usr/local/src/R-devel/tests'
> make[2]: Entering directory '/usr/local/src/R-devel/tests'
> make[3]: Entering directory '/usr/local/src/R-devel/tests/Examples'
> Testing examples for package ‘base’
> comparing ‘base-Ex.Rout’ to ‘base-Ex.Rout.prev’ ... NOTE
> 1573,1607c1573,1608
> < [35] "MANDATORY_PATH" "MFLAGS"
> < [37] "PAGER" "PATH"
> < [39] "PWD" "QT4_IM_MODULE"
> < [41] "QT_ACCESSIBILITY" "QT_IM_MODULE"
> < [43] "QT_LINUX_ACCESSIBILITY_ALWAYS_ON" "R_ARCH"
> < [45] "R_BROWSER" "R_BZIPCMD"
> < [47] "R_CMD" "R_DOC_DIR"
> < [49] "R_ENVIRON" "R_ENVIRON_USER"
> < [51] "R_GZIPCMD" "R_HOME"
> < [53] "R_INCLUDE_DIR" "R_LIBS"
> < [55] "R_LIBS_SITE" "R_LIBS_USER"
> < [57] "R_OSTYPE" "R_PAPERSIZE"
> < [59] "R_PAPERSIZE_USER" "R_PDFVIEWER"
> < [61] "R_PLATFORM" "R_PRINTCMD"
> < [63] "R_PROFILE" "R_PROFILE_USER"
> < [65] "R_RD4PDF" "R_SESSION_TMPDIR"
> < [67] "R_SHARE_DIR" "R_SYSTEM_ABI"
> < [69] "R_TEXI2DVICMD" "R_UNZIPCMD"
> < [71] "R_VERSION" "R_ZIPCMD"
> < [73] "SED" "SESSION"
> < [77] "SHELL" "SHLVL"
> < [79] "SSH_AGENT_PID" "SSH_AUTH_SOCK"
> < [81] "TAR" "TERM"
> < [83] "TEXINPUTS" "UPSTART_EVENTS"
> < [85] "UPSTART_INSTANCE" "UPSTART_JOB"
> < [87] "UPSTART_SESSION" "USER"
> < [89] "WINDOWID" "XAUTHORITY"
> < [91] "XDG_CONFIG_DIRS" "XDG_CURRENT_DESKTOP"
> < [93] "XDG_DATA_DIRS" "XDG_GREETER_DATA_DIR"
> < [95] "XDG_MENU_PREFIX" "XDG_RUNTIME_DIR"
> < [97] "XDG_SEAT" "XDG_SEAT_PATH"
> < [99] "XDG_SESSION_DESKTOP" "XDG_SESSION_ID"
> < [101] "XDG_SESSION_PATH" "XDG_SESSION_TYPE"
> < [103] "XDG_VTNR" "XMODIFIERS"
> ---
> > [35] "MAKE_TERMERR" "MAKE_TERMOUT"
> > [37] "MANDATORY_PATH" "MFLAGS"
> > [39] "PAGER" "PATH"
> > [41] "PWD" "QT4_IM_MODULE"
> > [43] "QT_ACCESSIBILITY" "QT_IM_MODULE"
> > [45] "QT_LINUX_ACCESSIBILITY_ALWAYS_ON" "R_ARCH"
> > [47] "R_BROWSER" "R_BZIPCMD"
> > [49] "R_CMD" "R_DOC_DIR"
> > [51] "R_ENVIRON" "R_ENVIRON_USER"
> > [53] "R_GZIPCMD" "R_HOME"
> > [55] "R_INCLUDE_DIR" "R_LIBS"
> > [57] "R_LIBS_SITE" "R_LIBS_USER"
> > [59] "R_OSTYPE" "R_PAPERSIZE"
> > [61] "R_PAPERSIZE_USER" "R_PDFVIEWER"
> > [63] "R_PLATFORM" "R_PRINTCMD"
> > [65] "R_PROFILE" "R_PROFILE_USER"
> > [67] "R_RD4PDF" "R_SESSION_TMPDIR"
> > [69] "R_SHARE_DIR" "R_SYSTEM_ABI"
> > [71] "R_TEXI2DVICMD" "R_UNZIPCMD"
> > [73] "R_VERSION" "R_ZIPCMD"
> > [75] "SED" "SESSION"
> > [77] "SESSIONTYPE" "SESSION_MANAGER"
> > [79] "SHELL" "SHLVL"
> > [81] "SSH_AGENT_PID" "SSH_AUTH_SOCK"
> > [83] "TAR" "TERM"
> > [85] "TEXINPUTS" "UPSTART_EVENTS"
> > [87] "UPSTART_INSTANCE" "UPSTART_JOB"
> > [89] "UPSTART_SESSION" "USER"
> > [91] "WINDOWID" "XAUTHORITY"
> > [93] "XDG_CONFIG_DIRS" "XDG_CURRENT_DESKTOP"
> > [95] "XDG_DATA_DIRS" "XDG_GREETER_DATA_DIR"
> > [97] "XDG_MENU_PREFIX" "XDG_RUNTIME_DIR"
> > [99] "XDG_SEAT" "XDG_SEAT_PATH"
> > [101] "XDG_SESSION_DESKTOP" "XDG_SESSION_ID"
> > [103] "XDG_SESSION_PATH" "XDG_SESSION_TYPE"
> > [105] "XDG_VTNR" "XMODIFIERS"
> 7903a7905,7906
> > MAKE_TERMERR: /dev/pts/10
> > MAKE_TERMOUT: /dev/pts/10
> 7936c7939
> < R_SESSION_TMPDIR: /tmp/RtmpSrm93R
> ---
> > R_SESSION_TMPDIR: /tmp/RtmpFkpTbp
> 11007c11010
> < [37] "tests" "tools" "zzz"
> ---
> > [37] "tests" "tools"
> Testing examples for package ‘tools’
> comparing ‘tools-Ex.Rout’ to ‘tools-Ex.Rout.save’ ... OK
> Testing examples for package ‘utils’
> comparing ‘utils-Ex.Rout’ to ‘utils-Ex.Rout.prev’ ... OK
> Testing examples for package ‘grDevices’
> comparing ‘grDevices-Ex.Rout’ to ‘grDevices-Ex.Rout.save’ ... OK
> Testing examples for package ‘graphics’
> comparing ‘graphics-Ex.Rout’ to ‘graphics-Ex.Rout.save’ ... OK
> Testing examples for package ‘stats’
> comparing ‘stats-Ex.Rout’ to ‘stats-Ex.Rout.save’ ... OK
> Testing examples for package ‘datasets’
> comparing ‘datasets-Ex.Rout’ to ‘datasets-Ex.Rout.save’ ... OK
> Testing examples for package ‘methods’
> comparing ‘methods-Ex.Rout’ to ‘methods-Ex.Rout.prev’ ... OK
> Testing examples for package ‘grid’
> comparing ‘grid-Ex.Rout’ to ‘grid-Ex.Rout.save’ ... OK
> Testing examples for package ‘splines’
> comparing ‘splines-Ex.Rout’ to ‘splines-Ex.Rout.save’ ... OK
> Testing examples for package ‘stats4’
> comparing ‘stats4-Ex.Rout’ to ‘stats4-Ex.Rout.save’ ... OK
> Testing examples for package ‘tcltk’
> comparing ‘tcltk-Ex.Rout’ to ‘tcltk-Ex.Rout.prev’ ... OK
> Testing examples for package ‘compiler’
> comparing ‘compiler-Ex.Rout’ to ‘compiler-Ex.Rout.prev’ ... OK
> Testing examples for package ‘parallel’
> comparing ‘parallel-Ex.Rout’ to ‘parallel-Ex.Rout.prev’ ... OK
> make[3]: Leaving directory '/usr/local/src/R-devel/tests/Examples'
> make[2]: Leaving directory '/usr/local/src/R-devel/tests'
> make[2]: Entering directory '/usr/local/src/R-devel/tests'
> running strict specific tests
> make[3]: Entering directory '/usr/local/src/R-devel/tests'
> running code in 'eval-etc.R' ... OK
> comparing 'eval-etc.Rout' to './eval-etc.Rout.save' ... OK
> running code in 'simple-true.R' ... OK
> comparing 'simple-true.Rout' to './simple-true.Rout.save' ... OK
> running code in 'arith-true.R' ... OK
> comparing 'arith-true.Rout' to './arith-true.Rout.save' ... OK
> running code in 'arith.R' ... OK
> comparing 'arith.Rout' to './arith.Rout.save' ... OK
> running code in 'lm-tests.R' ... OK
> comparing 'lm-tests.Rout' to './lm-tests.Rout.save' ... OK
> running code in 'ok-errors.R' ... OK
> comparing 'ok-errors.Rout' to './ok-errors.Rout.save' ... OK
> running code in 'method-dispatch.R' ... OK
> comparing 'method-dispatch.Rout' to './method-dispatch.Rout.save' ... OK
> running code in 'any-all.R' ... OK
> comparing 'any-all.Rout' to './any-all.Rout.save' ... OK
> running code in 'd-p-q-r-tests.R' ... OK
> comparing 'd-p-q-r-tests.Rout' to './d-p-q-r-tests.Rout.save' ... OK
> make[3]: Leaving directory '/usr/local/src/R-devel/tests'
> running sloppy specific tests
> make[3]: Entering directory '/usr/local/src/R-devel/tests'
> running code in 'complex.R' ... OK
> comparing 'complex.Rout' to './complex.Rout.save' ... OK
> running code in 'print-tests.R' ... OK
> comparing 'print-tests.Rout' to './print-tests.Rout.save' ... OK
> running code in 'lapack.R' ... OK
> comparing 'lapack.Rout' to './lapack.Rout.save' ... OK
> running code in 'datasets.R' ... OK
> comparing 'datasets.Rout' to './datasets.Rout.save' ... OK
> running code in 'datetime.R' ... OK
> comparing 'datetime.Rout' to './datetime.Rout.save' ... OK
> running code in 'iec60559.R' ... OK
> comparing 'iec60559.Rout' to './iec60559.Rout.save' ... OK
> make[3]: Leaving directory '/usr/local/src/R-devel/tests'
> make[2]: Leaving directory '/usr/local/src/R-devel/tests'
> make[2]: Entering directory '/usr/local/src/R-devel/tests'
> running regression tests ...
> make[3]: Entering directory '/usr/local/src/R-devel/tests'
> running code in 'array-subset.R' ... OK
> running code in 'reg-tests-1a.R' ... OK
> running code in 'reg-tests-1b.R' ... OK
> running code in 'reg-tests-1c.R' ... OK
> running code in 'reg-tests-1d.R' ... OK
> running code in 'reg-tests-2.R' ... OK
> comparing 'reg-tests-2.Rout' to './reg-tests-2.Rout.save' ... OK
> running code in 'reg-examples1.R' ... OK
> running code in 'reg-examples2.R' ... OK
> running code in 'reg-packages.R' ... OK
> running code in 'p-qbeta-strict-tst.R' ... OK
> running code in 'r-strict-tst.R' ... OK
> running code in 'reg-IO.R' ... OK
> comparing 'reg-IO.Rout' to './reg-IO.Rout.save' ... OK
> running code in 'reg-IO2.R' ... OK
> comparing 'reg-IO2.Rout' to './reg-IO2.Rout.save' ... OK
> running code in 'reg-plot.R' ... OK
> comparing 'reg-plot.pdf' to './reg-plot.pdf.save' ... OK
> running code in 'reg-S4-examples.R' ... OK
> running code in 'reg-BLAS.R' ... OK
> make[3]: Leaving directory '/usr/local/src/R-devel/tests'
> make[3]: Entering directory '/usr/local/src/R-devel/tests'
> running code in 'reg-tests-3.R' ... OK
> comparing 'reg-tests-3.Rout' to './reg-tests-3.Rout.save' ... OK
> running code in 'reg-examples3.R' ...Makefile.common:98: recipe for target 'reg-
> examples3.Rout' failed
> make[3]: *** [reg-examples3.Rout] Error 1
> make[3]: Leaving directory '/usr/local/src/R-devel/tests'
> Makefile.common:273: recipe for target 'test-Reg' failed
> make[2]: *** [test-Reg] Error 2
> make[2]: Leaving directory '/usr/local/src/R-devel/tests'
> Makefile.common:165: recipe for target 'test-all-basics' failed
> make[1]: *** [test-all-basics] Error 1
> make[1]: Leaving directory '/usr/local/src/R-devel/tests'
> Makefile:239: recipe for target 'check-all' failed
> make: *** [check-all] Error 2
>
> ______________________________________________
> R-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-devel
--
Peter Dalgaard, Professor,
Center for Statistics, Copenhagen Business School
Solbjerg Plads 3, 2000 Frederiksberg, Denmark
Phone: (+45)38153501
Office: A 4.23
Email: pd.mes at cbs.dk Priv: PDalgd at gmail.com
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