[Rd] R Package Installation Ignores libPaths Setting

[peter dalgaard]

Works for me. Which shell are you using? Are you setting .libPaths elsewhere?

Peter-Dalgaards-MacBook-Air:F pd$ R_LIBS=~/tmp Rscript -e '.libPaths()'
[1] "/Users/pd/tmp"                                                 
[2] "/Library/Frameworks/R.framework/Versions/3.2/Resources/library"

Peter-Dalgaards-MacBook-Air:F pd$ export R_LIBS=~/tmp 
Peter-Dalgaards-MacBook-Air:F pd$ Rscript -e '.libPaths()'
[1] "/Users/pd/tmp"                                                 
[2] "/Library/Frameworks/R.framework/Versions/3.2/Resources/library"

-pd

> On 20 Feb 2016, at 10:00 , Dario Strbenac <dstr7320 at uni.sydney.edu.au> wrote:
> 
> Good day,
> 
> I believe from the documentation that folders in R_LIBS should appear in the output of .libPaths, but they do not. The documentation contains "The library search path is initialized at startup from the environment variable R_LIBS ..."
> 
> However,
> 
> $ export R_LIBS=/users/stgrad/dario/tmp/
> $ Rscript -e ".libPaths()"
> [1] "/dskh/nobackup/biostat/Bioconductor" "/usr/local/lib/R/site-library"      
> [3] "/usr/lib/R/site-library"             "/usr/lib/R/library"
> 
> Is there some other crucial information which I have missed ?
> 
> --------------------------------------
> Dario Strbenac
> PhD Student
> University of Sydney
> Camperdown NSW 2050
> Australia
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-- 
Peter Dalgaard, Professor,
Center for Statistics, Copenhagen Business School
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