[Rd] Upgrading a package to which other packages are LinkingTo

[Karl Millar]

A couple of points:
  - rebuilding dependent packages is needed if there is an ABI change,
not just an API change.  For packages like Rcpp which export inline
functions or macros that might have changed, this is potentially any
change to existing functions, but for packages like Matrix, it isn't
really an issue at all IIUC.

  - If we're looking into a way to check if package APIs are
compatible, then that's something that's relevant for all packages,
since they all export an R API.  I believe that CRAN only tests
package compatibility with the most recent versions of packages on
CRAN that import or depend on it.  There's no guarantee that a package
update won't contain API or behaviour changes that breaks older
versions of packages, packages not on CRAN or any scripts that use the
package, and these sorts of breakages do happen semi-regularly.

 - AFAICT, the only difference with packages like Rcpp is that you can
potentially have all of your CRAN packages at the latest version, but
some of them might have inlined code from an older version of Rcpp
even after running update.packages().  While that is an issue, in my
experience that's been a lot less trouble than the general case of
backwards compatibility.

Karl

On Fri, Dec 16, 2016 at 8:19 AM, Dirk Eddelbuettel <edd at debian.org> wrote:
>
> On 16 December 2016 at 11:00, Duncan Murdoch wrote:
> | On 16/12/2016 10:40 AM, Dirk Eddelbuettel wrote:
> | > On 16 December 2016 at 10:14, Duncan Murdoch wrote:
> | > | On 16/12/2016 8:37 AM, Dirk Eddelbuettel wrote:
> | > | >
> | > | > On 16 December 2016 at 08:20, Duncan Murdoch wrote:
> | > | > | Perhaps the solution is to recommend that packages which export their
> | > | > | C-level entry points either guarantee them not to change or offer
> | > | > | (require?) version checks by user code.  So dplyr should start out by
> | > | > | saying "I'm using Rcpp interface 0.12.8".  If Rcpp has a new version
> | > | > | with a compatible interface, it replies "that's fine".  If Rcpp has
> | > | > | changed its interface, it says "Sorry, I don't support that any more."
> | > | >
> | > | > We try. But it's hard, and I'd argue, likely impossible.
> | > | >
> | > | > For example I even added a "frozen" package [1] in the sources / unit tests
> | > | > to test for just this. In practice you just cannot hit every possible access
> | > | > point of the (rich, in our case) API so the tests pass too often.
> | > | >
> | > | > Which is why we relentlessly test against reverse-depends to _at least ensure
> | > | > buildability_ from our releases.
> | >
> | > I meant to also add:  "... against a large corpus of other packages."
> | > The intent is to empirically answer this.
> | >
> | > | > As for seamless binary upgrade, I don't think in can work in practice.  Ask
> | > | > Uwe one day we he rebuilds everything every time on Windows. And for what it
> | > | > is worth, we essentially do the same in Debian.
> | > | >
> | > | > Sometimes you just need to rebuild.  That may be the price of admission for
> | > | > using the convenience of rich C++ interfaces.
> | > | >
> | > |
> | > | Okay, so would you say that Kirill's suggestion is not overkill?  Every
> | > | time package B uses LinkingTo: A, R should assume it needs to rebuild B
> | > | when A is updated?
> | >
> | > Based on my experience is a "halting problem" -- i.e. cannot know ex ante.
> | >
> | > So "every time" would be overkill to me.  Sometimes you know you must
> | > recompile (but try to be very prudent with public-facing API).  Many times
> | > you do not. It is hard to pin down.
> | >
> | > At work we have a bunch of servers with Rcpp and many packages against them
> | > (installed system-wide for all users). We _very really_ needs rebuild.
>
> Edit:  "We _very rarely_ need rebuilds" is what was meant there.
>
> | So that comes back to my suggestion:  you should provide a way for a
> | dependent package to ask if your API has changed.  If you say it hasn't,
> | the package is fine.  If you say it has, the package should abort,
> | telling the user they need to reinstall it.  (Because it's a hard
> | question to answer, you might get it wrong and say it's fine when it's
> | not.  But that's easy to fix:  just make a new release that does require
>
> Sure.
>
> We have always increased the higher-order version number when that is needed.
>
> One problem with your proposal is that the testing code may run after the
> package load, and in the case where it matters ... that very code may not get
> reached because the package didn't load.
>
> Dirk
>
> --
> http://dirk.eddelbuettel.com | @eddelbuettel | edd at debian.org
>
> ______________________________________________
> R-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-devel